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106 projects found  

1 accessions found for Nakamurella multipartita DSM 44233  

Data for CP001737  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001737.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001737_4528 CDS_5212562-5213983 89.7 5.9e-25 1
CP001737_0922 CDS_1043155-1044549 79.4 4.8e-22 1
CP001737_1163 CDS_1312505-1313530 72.9 3.2e-20 1
CP001737_4766 CDS_5505184-5503991 68.9 4.6e-19 1
CP001737_4099 CDS_4724875-4722929 68.3 6.8e-19 1
CP001737_1960 CDS_2224084-2226708 66.9 1.7e-18 1
CP001737_4256 CDS_4893502-4892024 66.9 1.7e-18 1
CP001737_4510 CDS_5190625-5192160 64.9 6.1e-18 1
CP001737_3609 CDS_4116016-4114799 59.2 2.5e-16 1
CP001737_4864 CDS_5612604-5610157 58.9 3.1e-16 1
CP001737_2484 CDS_2815732-2816868 55.2 3.4e-15 1
CP001737_0384 CDS_428769-430178 48.3 3.2e-13 1
CP001737_0037 CDS_43847-42936 37.9 2.7e-10 1
CP001737_4073 CDS_4674667-4673366 32.7 8e-09 1
CP001737_5124 CDS_5917586-5916624 28.4 1.4e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001737_4528 1/1 248 314 .. 1 87 [] 89.7 5.9e-25
CP001737_0922 1/1 237 303 .. 1 87 [] 79.4 4.8e-22
CP001737_1163 1/1 111 178 .. 1 87 [] 72.9 3.2e-20
CP001737_4766 1/1 146 212 .. 1 87 [] 68.9 4.6e-19
CP001737_4099 1/1 325 392 .. 1 87 [] 68.3 6.8e-19
CP001737_1960 1/1 642 708 .. 1 87 [] 66.9 1.7e-18
CP001737_4256 1/1 248 315 .. 1 87 [] 66.9 1.7e-18
CP001737_4510 1/1 272 341 .. 1 87 [] 64.9 6.1e-18
CP001737_3609 1/1 174 241 .. 1 87 [] 59.2 2.5e-16
CP001737_4864 1/1 624 692 .. 1 87 [] 58.9 3.1e-16
CP001737_2484 1/1 145 209 .. 1 87 [] 55.2 3.4e-15
CP001737_0384 1/1 238 305 .. 1 87 [] 48.3 3.2e-13
CP001737_0037 1/1 81 147 .. 1 87 [] 37.9 2.7e-10
CP001737_4073 1/1 201 265 .. 1 87 [] 32.7 8e-09
CP001737_5124 1/1 110 176 .. 1 87 [] 28.4 1.4e-07

Alignments of top-scoring domains:
CP001737_4528: domain 1 of 1, from 248 to 314: score 89.7, E = 5.9e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a++sHELRTPL++Irgyael+++ +e +++++
CP001737_4 248 RVRQFVADASHELRTPLASIRGYAELARR---------DEHDAQTV- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+++++e+ r++ L++dlL l+r+++g
CP001737_4 285 ----------GHALRRVESESARMSTLVDDLLLLARLDSG 314

CP001737_0922: domain 1 of 1, from 237 to 303: score 79.4, E = 4.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++fla++sHELRTPL++I+g a++L ++l +++eq
CP001737_0 237 RQRDFLASVSHELRTPLAGISGQAQALADGL--------VAPAEQ-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++i ea r++rL+ dlLdl+r++a
CP001737_0 274 ----------AEVGRSIGAEAARMNRLVGDLLDLARLGAD 303

CP001737_1163: domain 1 of 1, from 111 to 178: score 72.9, E = 3.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a +sH+LRTPL++Ir+++e+L++ + +++++
CP001737_1 111 SRRQLVAWVSHDLRTPLAGIRAMSEALED--------SVVVDPDEI- 148

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y ++i e+ rl+ +++dl +lsri ag
CP001737_1 149 ----------ADYARRISAETARLSTMVDDLFELSRINAG 178

CP001737_4766: domain 1 of 1, from 146 to 212: score 68.9, E = 4.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP++aI ++ae+ + ++ ++e +
CP001737_4 146 VRRDFVANVSHELKTPVAAIGLLAEATVD---------SADDPESV- 182

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + ++++ea+rl +L+++l +lsr++
CP001737_4 183 ----------RHFAGRLHHEAHRLGALVSELITLSRLQGA 212

CP001737_4099: domain 1 of 1, from 325 to 392: score 68.3, E = 6.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt++r++a++L + g+++ +e
CP001737_4 325 LQRRFTSDVSHELRTPLTTVRMAADMLYD-------GRSDFPEYL-- 362

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e + +e++r ++L+ dlL++sr +ag
CP001737_4 363 ----------GRSTELLVDELDRFESLLTDLLEISRYDAG 392

CP001737_1960: domain 1 of 1, from 642 to 708: score 66.9, E = 1.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akse+la +sHE RTPL+a++g+a++L+ +l++e +
CP001737_1 642 AKSELLALVSHEVRTPLNAVIGFAQVLRG---------LPLTPERQ- 678

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++e il ++++ll+Lindl dl+ +e+
CP001737_1 679 ----------SAAVEHILGAGRHLLQLINDLIDLTGAETR 708

CP001737_4256: domain 1 of 1, from 248 to 315: score 66.9, E = 1.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sHELRTP++a+rgy++l ++ ++l++e +
CP001737_4 248 KLRRFIADASHELRTPVAAVRGYTDLYQA---------GALPDESA- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ +++ ea+r+ +L++dlL+l +++a+
CP001737_4 285 ---------VDRAMQRMGFEARRMGALVDDLLTLIQADAE 315

CP001737_4510: domain 1 of 1, from 272 to 341: score 64.9, E = 6.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++fla++sH+LRTPL++I++ +++Ll+ a +el+ +r
CP001737_4 272 RMRRFLADASHDLRTPLAGIIAGSDALLR------ADFDELDRAER- 311

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l i r++++ rL++dlL ++ri++
CP001737_4 312 ----------EQRLVAIVRQSRQAARLVDDLLLMARIDNH 341

CP001737_3609: domain 1 of 1, from 174 to 241: score 59.2, E = 2.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+an+sHELRTPL++Ir+ +e+ l+ d+e+s+ ++
CP001737_3 174 AERRFVANASHELRTPLSVIRTEVEVTLA--------DPEASAADL- 211

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ ++l++++ +rL+ lL l+r +a
CP001737_3 212 ----------REMGAVVLEATDGANRLLTSLLVLARTQAR 241

CP001737_4864: domain 1 of 1, from 624 to 692: score 58.9, E = 3.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l ++ H++RTPL+a +++ L+ +d + ++++r
CP001737_4 624 LRTALLTAVGHDFRTPLAAATAAVTSLRS-------SDVTFGPQDR- 662

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l t+++++ rl+rL+++lLd+sr++ag
CP001737_4 663 ----------DELLATAEESLARLSRLVENLLDMSRLQAG 692

CP001737_2484: domain 1 of 1, from 145 to 209: score 55.2, E = 3.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l +++HELRTPLta+ gy+e L + + +
CP001737_2 145 RRTRLLGDVAHELRTPLTALDGYVEGLID---------GVFAPTP-- 180

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l ++ +e++rl rL +dl lsr++++
CP001737_2 181 -----------DILGSLSDELRRLHRLAEDLSSLSRAQEQ 209

CP001737_0384: domain 1 of 1, from 238 to 305: score 48.3, E = 3.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+f+ ++sHELR PLt++ ++e+L+ ++ +e +e
CP001737_0 238 LDARFAGDISHELRSPLTTMVNAIEVLRHRQ-------GEIPEVA-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++++ + e+er ++++ dlL++sr ++
CP001737_0 276 ----------RQAVDLLAGEVERFRKMLLDLLEISRSDED 305

CP001737_0037: domain 1 of 1, from 81 to 147: score 37.9, E = 2.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++ HELRTPLt++ + a+l+ +++ +++++
CP001737_0 81 RQRRFVADAGHELRTPLTVMHTRAQLIARRM-------EPQDPAL-- 118

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +l++++ l +++++lL + + a
CP001737_0 119 -----------PAMRQLLDDSRVLGEIVDELLASAVLTAD 147

CP001737_4073: domain 1 of 1, from 201 to 265: score 32.7, E = 8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ ++sH+LRT Lt++r+ +e L e +++++ +q
CP001737_4 201 RERDLAGDISHQLRTRLTGLRLRLEELAE--------YPDADVQQE- 238

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +l++++rl ++dlL +r +
CP001737_4 239 -------------VQEALEQTDRLVTVVDDLLANARSQRA 265

CP001737_5124: domain 1 of 1, from 110 to 176: score 28.4, E = 1.4e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a+ + EL TPLt++ + a+l+ + +t+ +++
CP001737_5 110 RQQRFVADTRQELQTPLTVVYLRAQLIAR--------RTPPDDPA-- 146

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +l +++ l ++ +dl +r++ +
CP001737_5 147 ----------LPAIRQLLADSRVLGEIADDLAAGARLGPE 176


Histogram of all scores:
score obs exp (one = represents 18 sequences)
----- --- ---
-15 1 0|=
-14 14 0|=
-13 41 3|*==
-12 210 119|======*=====
-11 438 621|========================= *
-10 859 1152|================================================ *
-9 1051 1189|==========================================================*
-8 975 890|=================================================*=====
-7 678 561|===============================*======
-6 423 323|=================*======
-5 232 177|=========*===
-4 135 94|=====*==
-3 68 50|==*=
-2 46 26|=*=
-1 20 13|*=
0 16 7|*
1 7 3|*
2 5 1|*
3 3 1|*
4 1 0|=
5 1 0|=
6 0 0|
7 0 0|
> 8 16 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 344.6199
P(chi-square) = 0

Total sequences searched: 5240

Whole sequence top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: