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Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Nakamurella multipartita DSM 44233  

Data for CP001737  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001737.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001737_1374 CDS_1560155-1561657 126.9 8.6e-36 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001737_1374 1/1 295 375 .. 1 94 [] 126.9 8.6e-36

Alignments of top-scoring domains:
CP001737_1374: domain 1 of 1, from 295 to 375: score 126.9, E = 8.6e-36
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLr+Qar++ d+ v + aL Es++RV+S
CP001737_1 295 EIHHRVKNNLQTVAALLRMQARRSADPSV-----RQALGESVRRVAS 336

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A++HE L++s d d+vd+++ +++L+ + + ++ + +
CP001737_1 337 IAMVHETLSTSPD-DRVDLDQIVDRLVPMISDVAAAETS-------A 375


Histogram of all scores:
score obs exp (one = represents 27 sequences)
----- --- ---
-15 11 0|=
-14 36 0|==
-13 85 32|=*==
-12 379 344|============*==
-11 1585 958|===================================*=======================
-10 1136 1240|=========================================== *
-9 783 1047|============================= *
-8 590 702|====================== *
-7 278 417|=========== *
-6 186 232|======= *
-5 72 125|=== *
-4 52 66|==*
-3 17 34|=*
-2 11 18|*
-1 10 9|*
0 4 4|*
1 2 2|*
2 1 1|*
> 3 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 683.3654
P(chi-square) = 0

Total sequences searched: 5240

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: