Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Thermomonospora curvata DSM 43183  

Data for CP001738  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001738.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001738_3619 CDS_4247032-4245521 109.9 5.5e-31 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001738_3619 1/1 299 366 .. 1 74 [. 109.9 5.5e-31

Alignments of top-scoring domains:
CP001738_3619: domain 1 of 1, from 299 to 366: score 109.9, E = 5.5e-31
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQar+ + +e+ ++aL+E+++RV S
CP001738_3 299 EIHHRVKNNLQTVAALLRLQARRLQVPEA-----RAALEEAVRRVGS 340

mAliHEeLYksedldtvdfseYlekLt<-*
+A++HE L+ + d + +df+e ++++
CP001738_3 341 IAIVHETLSLTPD-EMIDFDEIADRVI 366


Histogram of all scores:
score obs exp (one = represents 23 sequences)
----- --- ---
-15 21 0|=
-14 35 0|==
-13 109 30|=*===
-12 331 321|=============*=
-11 1333 894|======================================*===================
-10 1117 1157|================================================= *
-9 721 977|================================ *
-8 567 655|========================= *
-7 280 389|============= *
-6 200 216|=========*
-5 82 116|==== *
-4 51 61|==*
-3 14 32|=*
-2 14 16|*
-1 6 8|*
0 5 4|*
1 2 2|*
> 2 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 553.1957
P(chi-square) = 0

Total sequences searched: 4890

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: