Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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4 projects found  

3 accessions found for Sebaldella termitidis ATCC 33386  

Data for CP001739  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001739.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001739_2289 CDS_2460733-2459240 80.3 2e-22 1
CP001739_0284 CDS_320580-319282 60.7 7.1e-17 1
CP001739_1862 CDS_2018311-2019948 55.1 2.8e-15 1
CP001739_3633 CDS_3913870-3915183 53.7 7.1e-15 1
CP001739_0513 CDS_580427-579150 50.6 5.2e-14 1
CP001739_1065 CDS_1189665-1188250 48.7 1.9e-13 1
CP001739_1112 CDS_1237923-1236547 45.7 1.3e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001739_2289 1/1 264 331 .. 1 87 [] 80.3 2e-22
CP001739_0284 1/1 208 275 .. 1 87 [] 60.7 7.1e-17
CP001739_1862 1/1 327 388 .. 1 87 [] 55.1 2.8e-15
CP001739_3633 1/1 221 287 .. 1 87 [] 53.7 7.1e-15
CP001739_0513 1/1 205 272 .. 1 87 [] 50.6 5.2e-14
CP001739_1065 1/1 256 322 .. 1 87 [] 48.7 1.9e-13
CP001739_1112 1/1 234 301 .. 1 87 [] 45.7 1.3e-12

Alignments of top-scoring domains:
CP001739_2289: domain 1 of 1, from 264 to 331: score 80.3, E = 2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f++++sHELRTPL+ I+gyae++++ ls+e++
CP001739_2 264 SQSKFVSDASHELRTPLAIIKGYAEIIKK---------RRLSDEEV- 300

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e +e i++e+e + +L++ lL l++ e++
CP001739_2 301 ---------FDESIEAIINETENMKNLVQKLLMLAKGEEE 331

CP001739_0284: domain 1 of 1, from 208 to 275: score 60.7, E = 7.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f++n+sHEL+TPLt I+gy+ +L+e + + ++
CP001739_0 208 IQKDFISNVSHELKTPLTNIKGYTIALEE---------SIENKDD-- 243

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++++i + ++ +++Li d+L +s+ e
CP001739_0 244 --------NVKNFFKIINSNINKIDNLIYDFLNYSKYEGF 275

CP001739_1862: domain 1 of 1, from 327 to 388: score 55.1, E = 2.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
e++ nlsHE++TPLt+I+gya+lL e++d
CP001739_1 327 NTKELMGNLSHEFKTPLTVISGYADLLAEDYD--------------- 358

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+e+i +ea+rl Li++ +++
CP001739_1 359 ----------QKYIEIITEEADRLAVLIEETTRAMSLDSK 388

CP001739_3633: domain 1 of 1, from 221 to 287: score 53.7, E = 7.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f +n+sHEL+TP++ ++gy+++L+ + ++ +
CP001739_3 221 NQKNFSSNVSHELKTPVAIMKGYLDILKW---------GRDDPVLL- 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+le i+ e+ +++Li +lL ls++e
CP001739_3 258 ----------NEALENIETEIINIEKLITNLLFLSQAEKL 287

CP001739_0513: domain 1 of 1, from 205 to 272: score 50.6, E = 5.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sHEL+TPL+ I++++++L ++ + + +
CP001739_0 205 NQQRFIADASHELKTPLSIISANLDVLYAN--------KDETIASQ- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ + + ++r++ L++ +L ls++e++
CP001739_0 243 ----------LKWIDYASKGVKRMSGLVQSMLALSKAETE 272

CP001739_1065: domain 1 of 1, from 256 to 322: score 48.7, E = 1.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f++n+sHEL+TP+t+I +a++L + + +
CP001739_1 256 NLKSFASNASHELKTPITVINSHAQALVS---------GIIKGDSL- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y + il+e+ +++L+ +lL++s++ ++
CP001739_1 293 ----------PKYYRNILKESIEMNDLVTNLLTISKLSSP 322

CP001739_1112: domain 1 of 1, from 234 to 301: score 45.7, E = 1.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
f+ ++ HEL+TP+t + ++ae + ++ + + e++
CP001739_1 234 DTKNFITAITHELKTPITIMNTHAEFIAGGY--------ADTVEEL- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey i++e++++ +Li+ lL l + +
CP001739_1 272 ----------QEYAGEIINEGQHMTKLIDSLLVLLKSSSL 301


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-15 3 0|=
-14 18 0|==
-13 63 3|*====
-12 271 93|======*=============
-11 577 484|==================================*=======
-10 797 897|========================================================= *
-9 800 927|==========================================================*
-8 627 694|============================================= *
-7 384 437|============================ *
-6 224 251|================ *
-5 155 138|=========*==
-4 72 73|=====*
-3 39 39|==*
-2 16 20|=*
-1 16 10|*=
0 7 5|*
1 5 2|*
2 0 1|*
3 1 0|=
> 4 8 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 407.1400
P(chi-square) = 0

Total sequences searched: 4083

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: