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Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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7 projects found  

1 accessions found for Meiothermus ruber DSM 1279  

Data for CP001743  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001743.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001743_1084 CDS_1108129-1106708 84.8 8.3e-24 1
CP001743_0299 CDS_270342-271424 69.8 1.4e-19 1
CP001743_0310 CDS_281884-283161 65.5 2.4e-18 1
CP001743_0031 CDS_27163-28434 64.1 5.8e-18 1
CP001743_2771 CDS_2845019-2846380 61.2 3.9e-17 1
CP001743_0032 CDS_29762-28422 61.2 4e-17 1
CP001743_1381 CDS_1437192-1438310 60.5 6.3e-17 1
CP001743_1012 CDS_1027298-1026051 57.3 5e-16 1
CP001743_0628 CDS_626154-624832 53.1 8e-15 1
CP001743_2996 CDS_3076315-3077619 46.1 7.7e-13 1
CP001743_1520 CDS_1574269-1575228 45.7 9.5e-13 1
CP001743_1239 CDS_1284368-1286104 31.8 8.6e-09 1
CP001743_0635 CDS_631338-632327 28.3 8.1e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001743_1084 1/1 249 315 .. 1 87 [] 84.8 8.3e-24
CP001743_0299 1/1 140 203 .. 1 87 [] 69.8 1.4e-19
CP001743_0310 1/1 222 284 .. 1 87 [] 65.5 2.4e-18
CP001743_0031 1/1 199 263 .. 1 87 [] 64.1 5.8e-18
CP001743_2771 1/1 217 279 .. 1 87 [] 61.2 3.9e-17
CP001743_0032 1/1 240 303 .. 1 87 [] 61.2 4e-17
CP001743_1381 1/1 137 203 .. 1 87 [] 60.5 6.3e-17
CP001743_1012 1/1 216 279 .. 1 87 [] 57.3 5e-16
CP001743_0628 1/1 230 293 .. 1 87 [] 53.1 8e-15
CP001743_2996 1/1 223 287 .. 1 87 [] 46.1 7.7e-13
CP001743_1520 1/1 98 162 .. 1 87 [] 45.7 9.5e-13
CP001743_1239 1/1 362 430 .. 1 87 [] 31.8 8.6e-09
CP001743_0635 1/1 120 187 .. 1 87 [] 28.3 8.1e-08

Alignments of top-scoring domains:
CP001743_1084: domain 1 of 1, from 249 to 315: score 84.8, E = 8.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++fla++sHELRTP+taI+g++ Ll+ +t +e+q
CP001743_1 249 TQGRFLADASHELRTPVTAILGHVNYLLR--------RTQITEQQ-- 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re le+i+re+er+++L+ dlL+ls+ +
CP001743_1 286 ----------RESLEIIKRESERMQKLVGDLLELSKTGGS 315

CP001743_0299: domain 1 of 1, from 140 to 203: score 69.8, E = 1.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e+l++++HELRTPL+a++gy+e+L + + l++eq+
CP001743_0 140 HRTELLSSVAHELRTPLSALQGYSEALAD---------GVLPPEQA- 176

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
i+re++ + rLi+dl sriea+
CP001743_0 177 -------------AAHIEREVRAMGRLIDDLALVSRIEAQ 203

CP001743_0310: domain 1 of 1, from 222 to 284: score 65.5, E = 2.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+ ++sHELR+PL+a++gy+e+L++ + +
CP001743_0 222 AARRFAYGASHELRNPLAALKGYLEVLQR---------RPGEPRA-- 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +lrea r+++L++ lL+l+r+e +
CP001743_0 258 -------------TEGALREAARMESLLQGLLTLARLEGQ 284

CP001743_0031: domain 1 of 1, from 199 to 263: score 64.1, E = 5.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HELRTPLt+++g +e++++++ +l +
CP001743_0 199 ERRAMIADIAHELRTPLTVMQGRLEAIQDGV-------MPLEMSE-- 236

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++++a+ l+rL++dl++ls ++ag
CP001743_0 237 -------------VDRLHQQARLLSRLVEDLRTLSLADAG 263

CP001743_2771: domain 1 of 1, from 217 to 279: score 61.2, E = 3.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + fla +sHELRTPLt++ gy+e L + ++ +
CP001743_2 217 RERAFLAEVSHELRTPLTSLNGYLERLSR------------NPGD-- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+le++++ a + r+++dlL l+r ea+
CP001743_2 250 ----------TEMLERARKIAAHTVRMVQDLLALARGEAE 279

CP001743_0032: domain 1 of 1, from 240 to 303: score 61.2, E = 4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef++n++HELRTPLt++r+ +++L+ + +s+e++
CP001743_0 240 RETEFTRNAAHELRTPLTSLRLQLDALQQ---------GLASPEET- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++++e+er+ +L + lL+l+r + g
CP001743_0 277 -------------LSVVREEVERMTHLSESLLTLAREGRG 303

CP001743_1381: domain 1 of 1, from 137 to 203: score 60.5, E = 6.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ fl ++sHE+RTP++++r++a++L + el+ e++
CP001743_1 137 RQQNFLMAASHEFRTPISTLRLLAQTLAM---------RELPREKQ- 173

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yle +++e++r+++L ++lL sr+ +g
CP001743_1 174 ----------RTYLEHMIHEIDRMEDLTERLLATSRLAQG 203

CP001743_1012: domain 1 of 1, from 216 to 279: score 57.3, E = 5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++fla+++HELRTPL+a r+ +e++ + +++eq
CP001743_1 216 REQQFLAYAAHELRTPLSAFRASLEAAGL--------QGQMGPEQ-- 252

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++++rea rl+ L ++lL lsr+e+g
CP001743_1 253 -------------LSRLHREALRLETLAQNLLALSRAESG 279

CP001743_0628: domain 1 of 1, from 230 to 293: score 53.1, E = 8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f +++sHELRTPL+++r+ +e+L+ + l++
CP001743_0 230 RERNFSRYASHELRTPLATLRAQIEALEQ---------GLLTP---- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l i+r++erl++L+ lL l+ri +
CP001743_0 264 ----------QESLPAIKRSLERLEHLLAALLALTRIPHK 293

CP001743_2996: domain 1 of 1, from 223 to 287: score 46.1, E = 7.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+ +++H LRTPL+ ++g +e +l ++++
CP001743_2 223 SERRFTQDAAHALRTPLAILSGRIERALS----------QAPDPV-- 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l ++++++ ll+L++ lL l+r++ag
CP001743_2 258 ----------KPELLEAQKSLRDLLDLVESLLHLARADAG 287

CP001743_1520: domain 1 of 1, from 98 to 162: score 45.7, E = 9.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e + l+HE+RTP+++++ ++e+L++ ls +++
CP001743_1 98 VLEESSRVLAHEFRTPVAGMLSLLEALQN----------GLSGPEA- 133

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+ +++e++rl+rL++d L l r ++
CP001743_1 134 ----------QEALQLLYQETQRLRRLVED-LPLNRRPSQ 162

CP001743_1239: domain 1 of 1, from 362 to 430: score 31.8, E = 8.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + +a+l+HEL +P+ + ++++++L+e++ + ++ e++
CP001743_1 362 QIGYVFAGLRHELVNPIGSAMMALSALRENV-------ALWPLEKV- 400

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+e++l e++r L++ l ++s e +
CP001743_1 401 ----------VEYVERALAELDRAGYLLRTLKTFSLEELE 430

CP001743_0635: domain 1 of 1, from 120 to 187: score 28.3, E = 8.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ a+l H+L+TPL a + ++e L+e ++ ++e+r
CP001743_0 120 AREATYAALTHDLKTPLLASLRALEYLEE--------ADKIGPEKR- 157

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+ +++e+ r L+++lL+ sr+ea
CP001743_0 158 ----------KELLRNLREELSRSYLLVENLLTASRLEAR 187


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 4 0|=
-13 38 2|*===
-12 120 68|======*====
-11 290 357|=========================== *
-10 454 662|========================================== *
-9 591 684|====================================================== *
-8 521 512|==============================================*=
-7 390 322|=============================*======
-6 240 185|================*=====
-5 164 101|=========*=====
-4 106 54|====*=====
-3 41 28|==*=
-2 18 15|=*
-1 12 7|*=
0 6 4|*
1 4 2|*
> 2 15 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 252.9935
P(chi-square) = 0

Total sequences searched: 3014

Whole sequence top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: