Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
3 projects found  

2 accessions found for Planctomyces limnophilus DSM 3776  

Data for CP001744  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001744.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001744_3178 CDS_4154861-4153131 99.0 1e-27 1
CP001744_2732 CDS_3585386-3581979 97.6 2.7e-27 1
CP001744_2300 CDS_3019379-3017103 96.2 6.5e-27 1
CP001744_0672 CDS_883783-887751 96.0 7.4e-27 1
CP001744_2388 CDS_3150420-3147988 94.1 2.6e-26 1
CP001744_3027 CDS_3959957-3957366 90.3 3e-25 2
CP001744_1327 CDS_1717704-1715293 87.9 1.4e-24 1
CP001744_1665 CDS_2190040-2187569 87.1 2.6e-24 1
CP001744_1471 CDS_1922712-1920958 85.4 7.6e-24 1
CP001744_3235 CDS_4226878-4229925 81.9 7.6e-23 1
CP001744_1851 CDS_2447031-2449718 78.3 7.9e-22 1
CP001744_0426 CDS_534840-533134 75.1 6.4e-21 1
CP001744_0002 CDS_4967-3189 66.1 2.2e-18 1
CP001744_2517 CDS_3306813-3307757 65.6 3.2e-18 1
CP001744_3781 CDS_4914761-4913793 58.6 3e-16 1
CP001744_2059 CDS_2707534-2706002 56.0 1.6e-15 1
CP001744_0119 CDS_166942-162257 53.7 7.1e-15 1
CP001744_2726 CDS_3574211-3572787 52.0 2.2e-14 1
CP001744_3808 CDS_4950015-4951466 48.7 1.8e-13 1
CP001744_1630 CDS_2133532-2136219 44.3 3.3e-12 1
CP001744_3018 CDS_3945018-3943057 42.0 1.5e-11 1
CP001744_1722 CDS_2268027-2268839 37.1 3.6e-10 1
CP001744_0016 CDS_21061-19592 28.4 1.1e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001744_3178 1/1 298 364 .. 1 87 [] 99.0 1e-27
CP001744_2732 1/1 428 493 .. 1 87 [] 97.6 2.7e-27
CP001744_2300 1/1 190 256 .. 1 87 [] 96.2 6.5e-27
CP001744_0672 1/1 609 674 .. 1 87 [] 96.0 7.4e-27
CP001744_2388 1/1 407 477 .. 1 87 [] 94.1 2.6e-26
CP001744_1327 1/1 384 450 .. 1 87 [] 87.9 1.4e-24
CP001744_1665 1/1 432 497 .. 1 87 [] 87.1 2.6e-24
CP001744_1471 1/1 351 418 .. 1 87 [] 85.4 7.6e-24
CP001744_3235 1/1 599 665 .. 1 87 [] 81.9 7.6e-23
CP001744_1851 1/1 665 732 .. 1 87 [] 78.3 7.9e-22
CP001744_0426 1/1 327 394 .. 1 87 [] 75.1 6.4e-21
CP001744_3027 1/2 206 274 .. 1 87 [] 70.6 1.2e-19
CP001744_0002 1/1 345 411 .. 1 87 [] 66.1 2.2e-18
CP001744_2517 1/1 80 145 .. 1 87 [] 65.6 3.2e-18
CP001744_3781 1/1 75 141 .. 1 87 [] 58.6 3e-16
CP001744_2059 1/1 275 353 .. 1 87 [] 56.0 1.6e-15
CP001744_0119 1/1 1191 1257 .. 1 87 [] 53.7 7.1e-15
CP001744_2726 1/1 239 305 .. 1 87 [] 52.0 2.2e-14
CP001744_3808 1/1 247 312 .. 1 87 [] 48.7 1.8e-13
CP001744_1630 1/1 650 716 .. 1 87 [] 44.3 3.3e-12
CP001744_3018 1/1 417 487 .. 1 87 [] 42.0 1.5e-11
CP001744_1722 1/1 31 96 .. 1 87 [] 37.1 3.6e-10
CP001744_0016 1/1 242 307 .. 1 87 [] 28.4 1.1e-07

Alignments of top-scoring domains:
CP001744_3178: domain 1 of 1, from 298 to 364: score 99.0, E = 1e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla++sHELRTPL++I+g++e+Ll ++l+++q
CP001744_3 298 IKNEFLATMSHELRTPLNSILGFSEVLLS--------TSTLPDKQ-- 334

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ i+ +++ ll+Lind+Ldl++ie+g
CP001744_3 335 ----------RRYVSNIQTAGKNLLNLINDVLDLAKIESG 364

CP001744_2732: domain 1 of 1, from 428 to 493: score 97.6, E = 2.7e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTPL+aI+g++el + t+l q
CP001744_2 428 AKSDFLANMSHEIRTPLNAIIGMTELVMD---------TDLKVAQ-- 463

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+ +l+++e+ll +ind+Ld+s+ieag
CP001744_2 464 ----------RDYLRMVLESGESLLGIINDILDFSKIEAG 493

CP001744_2300: domain 1 of 1, from 190 to 256: score 96.2, E = 6.5e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTPLtaI+g+ae +++ +e s+ ++
CP001744_2 190 AKSDFLAHMSHEIRTPLTAILGFAESIQK---------EEVSAAEH- 226

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++tilr +e+ll+Lind Ldls+ieag
CP001744_2 227 ----------RSAVDTILRNGEHLLSLINDTLDLSKIEAG 256

CP001744_0672: domain 1 of 1, from 609 to 674: score 96.0, E = 7.4e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla +sHE+RTPL++++g+++lL++ t l++ q
CP001744_0 609 AKSQFLAKMSHEIRTPLNGVIGMLDLLKA---------TSLDDRQ-- 644

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+ + +++a+ ll Lind+Ldls+ieag
CP001744_0 645 ----------KRYVTICRSSADTLLGLINDILDLSKIEAG 674

CP001744_2388: domain 1 of 1, from 407 to 477: score 94.1, E = 2.6e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++flan+sHE+RTP+taI+gy+elL e++d ++ s+e +
CP001744_2 407 AKTDFLANMSHEIRTPMTAILGYTELLAENSD----PAGTTSAERI- 448

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +eti+r +++ll++ind+Ldls+ieag
CP001744_2 449 -----------ECIETIRRNGDHLLEIINDILDLSKIEAG 477

CP001744_1327: domain 1 of 1, from 384 to 450: score 87.9, E = 1.4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTP+taI+gy+elLle ++ +
CP001744_1 384 TKSEFLANMSHEIRTPMTAILGYTELLLE--------QPDIAPHA-- 420

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ti+r a+ ll++ind+Ldls+iea
CP001744_1 421 ----------ADSLQTIRRNADFLLEIINDILDLSKIEAD 450

CP001744_1665: domain 1 of 1, from 432 to 497: score 87.1, E = 2.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTP+taI+g+ae + l++ +e+
CP001744_1 432 AKSDFLANMSHEIRTPMTAILGFAEQVSASLNR---------PED-- 467

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l++i+r +e+ll+Lind+Ld+s+ie+g
CP001744_1 468 ----------CEALSIIRRNGEHLLKLINDILDISKIESG 497

CP001744_1471: domain 1 of 1, from 351 to 418: score 85.4, E = 7.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef++n+sHEL+TPLt+I++yae+Ll+ +++ +e++
CP001744_1 351 LRREFVSNVSHELKTPLTSISAYAETLLN---------GAMEDEETC 388

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l++i+++aerl++Li dl l+r+++
CP001744_1 389 ----------RTFLQRIEEQAERLNKLIADLIALARLDSI 418

CP001744_3235: domain 1 of 1, from 599 to 665: score 81.9, E = 7.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ fla+lsHELR+PLt I+ ++e+ ++ ++ls+e++
CP001744_3 599 RKDFFLATLSHELRNPLTPISNALEAWRA---------ADLSPEEL- 635

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e e + r+++++ rLi+dlLd sri g
CP001744_3 636 ----------TEVREMLSRQTKQMVRLIDDLLDVSRISGG 665

CP001744_1851: domain 1 of 1, from 665 to 732: score 78.3, E = 7.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l+++sH+L+TPL+aI g+++ Lle t l+ee+r
CP001744_1 665 VRSSLLSSVSHDLKTPLAAIAGASSSLLE--------ATSLDEETR- 702

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++let+ +ea rl+rL++++L++s+++ag
CP001744_1 703 ----------RQLLETVADEAARLNRLLENILQMSKLDAG 732

CP001744_0426: domain 1 of 1, from 327 to 394: score 75.1, E = 6.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ef++++ HE++TP+++I++yaelL++ g+ + eeq
CP001744_0 327 RHAEFVSSVCHEFKTPMSSIKAYAELLRD-------GEIDEAEEQ-- 364

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i+++++rl+rL++++L l+rie+g
CP001744_0 365 ----------QKILVFIDEQVDRLSRLVDNMLNLARIESG 394

CP001744_3027: domain 1 of 2, from 206 to 274: score 70.6, E = 1.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f+an+sHELRTPLt I++ +e +l++ +e+ ++++
CP001744_3 206 MKGRFFANISHELRTPLTLIMAPVEEMLAWP-------AERLAPTV- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+ i++ + rll LindlL+l r ++
CP001744_3 245 ----------RDALRLIQQGGLRLLGLINDLLELVRFDQS 274

CP001744_0002: domain 1 of 1, from 345 to 411: score 66.1, E = 2.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f++++sHELRTP++++++ +e +l+ e+s+++
CP001744_0 345 RQVRFTSDASHELRTPIAVVLAQTEHALA---------RERSAQE-- 380

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr++l+ r+a r++ L++ lL l+r+++g
CP001744_0 381 ---------YRQALSACGRSASRMRTLVESLLALARADSG 411

CP001744_2517: domain 1 of 1, from 80 to 145: score 65.6, E = 3.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ ef+a++ HE+++PL++I+g ++lLl +e ++
CP001744_2 80 ALAEFAAGAGHEINNPLATILGRVQLLLP---------GESHPDR-- 115

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ leti +++ r++++i dl+ ++r a+
CP001744_2 116 ----------RKHLETIMSQTLRIRDMIGDLMLFARPPAP 145

CP001744_3781: domain 1 of 1, from 75 to 141: score 58.6, E = 3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ ++ HEL+ P++++++++e+L ls++qr
CP001744_3 75 RQANFVDAVTHELKSPIASLSLHLETLSL---------RSLSDDQR- 111

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ t++re+erl++Li +lLd r+ a
CP001744_3 112 ----------QKFYATMERELERLDHLITQLLDVGRLNAT 141

CP001744_2059: domain 1 of 1, from 275 to 353: score 56.0, E = 1.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldk......v.lagdte
+ ++a+++HE+++PL+aI++++e L + ++++ +l++++e
CP001744_2 275 GVGFLAAGVAHEINNPLSAISMASESLAS---RvagsngEpLLISAE 318

lseeqrlpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e r+yle i++ea r++++ ++lL+++r +
CP001744_2 319 DAEVA------------RQYLEMIQSEAGRCEEITSRLLTFARGQDA 353

CP001744_0119: domain 1 of 1, from 1191 to 1257: score 53.7, E = 7.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+ +++H++++ Lt+I y+elLl+ ++ ++
CP001744_0 1191 AVGQFAGGIAHDFNNLLTVINCYCELLLD---------QKSQPQN-- 1226

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+re ++ i++e+ r +L +lLd+sr +
CP001744_0 1227 ---------WRESVQHIRDEGLRAAQLTKQLLDFSRRSHF 1257

CP001744_2726: domain 1 of 1, from 239 to 305: score 52.0, E = 2.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + flan++HELR PLta++ ++++l ++ + +
CP001744_2 239 RNNSFLANAAHELRSPLTAMISQIDVALS---------KPRESAE-- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+e let+l+e ++l L+++l++l+ +
CP001744_2 275 ---------YQETLETLLEECQHLATLVRQLMQLAESDVR 305

CP001744_3808: domain 1 of 1, from 247 to 312: score 48.7, E = 1.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++a+++HE +PL+aI+ +++lL + + ++ +
CP001744_3 247 AFGLLAAGIAHEVGNPLAAISSLVQLLNR---------RDIDAHT-- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l+ ++++++r++r +++l d+sr ++
CP001744_3 283 ----------REKLHLVDDQLRRIQRTLRELVDFSRPATN 312

CP001744_1630: domain 1 of 1, from 650 to 716: score 44.3, E = 3.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++++lsH++++ +++I+gy+e+Ll +++ +++q
CP001744_1 650 VMKQMASGLSHDFNNLISVILGYCETLLI--------RPDTTDQQ-- 686

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ i++++++ +r+i++l +sr +
CP001744_1 687 ----------RSLILPIREAGHHASRMIRQLIAFSRKQPV 716

CP001744_3018: domain 1 of 1, from 417 to 487: score 42.0, E = 1.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ +++HE+++PL aI +y+e+L ++++q+
CP001744_3 417 SLGQLATGIAHEINQPLGAIAAYSEALPL---------VLQNPDQQS 454

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ +++ ++i+++a r +++n+++ + r
CP001744_3 455 DEA-------ARIASRIRDAALRAGSIVNRMRSFLRTSKS 487

CP001744_1722: domain 1 of 1, from 31 to 96: score 37.1, E = 3.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++ ++ HE+++ L +++ ya++ + ++ ++
CP001744_1 31 SVGMLATSITHEFNNILMTVINYAKMGIR---------HKDPATR-- 66

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++il +++r +++ +L ++r +a
CP001744_1 67 ----------EKAFDKILAAGQRASKITTGMLSYARRQAD 96

CP001744_0016: domain 1 of 1, from 242 to 307: score 28.4, E = 1.1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ a+ +H+LR+ + r+++e ++ ++ s+ +
CP001744_0 242 TLGQLGAGFAHQLRNAALGARMALEFSER---------GDSSSSD-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++++l +++r++ ++++L lsr +
CP001744_0 278 ----------HESVQIALAQLQRMELYLDRFLRLSRPDRV 307


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 21 0|==
-13 84 3|*======
-12 192 95|=======*=======
-11 386 497|============================== *
-10 659 923|=================================================== *
-9 743 953|==========================================================*
-8 676 713|==================================================== *
-7 583 449|==================================*==========
-6 346 258|===================*=======
-5 209 142|==========*======
-4 123 76|=====*====
-3 68 40|===*==
-2 34 21|=*=
-1 25 11|*=
0 10 5|*
1 7 2|*
2 4 1|*
3 1 0|=
4 0 0|
5 0 0|
> 6 27 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 422.7920
P(chi-square) = 0

Total sequences searched: 4198

Whole sequence top hits:
tophits_s report:
Total hits: 23
Satisfying E cutoff: 23
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 23
Satisfying E cutoff: 23
Total memory: 30K


Acknowledgements:

This research is funded by:

Developed by: