Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
3 projects found  

2 accessions found for Planctomyces limnophilus DSM 3776  

Data for CP001744  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001744.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001744_3722 CDS_4838681-4839865 46.3 2.4e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001744_3722 1/1 178 244 .. 1 70 [] 46.3 2.4e-13

Alignments of top-scoring domains:
CP001744_3722: domain 1 of 1, from 178 to 244: score 46.3, E = 2.4e-13
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RI+RELHD gQ L+a++l l l++ l + +p++ + ++++
CP001744_3 178 ERRRISRELHDQCGQDLTALRLALKLIEDSL--PNEPGQTA-YFRTA 221

relarealaevRrllgdLRpaal<-*
el+++ +e+ l+ +LRp++l
CP001744_3 222 SELIDRISSEIHTLALNLRPPEL 244


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 16 0|==
-13 94 0|========
-12 130 46|===*======
-11 202 384|================ *
-10 501 892|======================================= *
-9 753 1013|==========================================================*
-8 634 781|================================================= *
-7 624 491|=====================================*==========
-6 415 278|=====================*==========
-5 327 149|===========*==============
-4 189 77|=====*=========
-3 122 40|===*======
-2 75 20|=*====
-1 55 10|*====
0 21 5|*=
1 10 2|*
2 17 1|*=
3 2 0|=
4 4 0|=
5 2 0|=
> 6 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1525.9163
P(chi-square) = 0

Total sequences searched: 4198

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: