Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

1 accessions found for Anaplasma centrale str. Israel  

Data for CP001759  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001759.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001759_0739 CDS_970346-968937 92.9 1.3e-26 1
CP001759_0620 CDS_788350-790833 45.7 3e-13 1
CP001759_0864 CDS_1126753-1124657 37.4 6.8e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001759_0739 1/1 233 302 .. 1 87 [] 92.9 1.3e-26
CP001759_0620 1/1 437 503 .. 1 87 [] 45.7 3e-13
CP001759_0864 1/1 469 540 .. 1 87 [] 37.4 6.8e-11

Alignments of top-scoring domains:
CP001759_0739: domain 1 of 1, from 233 to 302: score 92.9, E = 1.3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+flan+sHELRTPL++I+g++e+++ e+ ++ ++e+
CP001759_0 233 SKSQFLANVSHELRTPLNSIIGFSEIIQSES------LGPIGSEE-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey++ i++++ +ll+Lind+Ld+s++ea+
CP001759_0 272 ---------YKEYISDIHQSGVHLLSLINDILDFSKAEAN 302

CP001759_0620: domain 1 of 1, from 437 to 503: score 45.7, E = 3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI+g+++lLl ++ +++
CP001759_0 437 AIGQLAGGIAHDFNNILTAIIGFCDLLLI--------QHPVTDPS-- 473

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++ a+r +Li +l+ +sr ++
CP001759_0 474 ----------FRDIMQIKQNANRATNLIKQLMAFSRKQTL 503

CP001759_0864: domain 1 of 1, from 469 to 540: score 37.4, E = 6.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a s+ ++ ++HE+++P+t I ++ae L ++ ++ s +++
CP001759_0 469 AWSDVARRIAHEIKNPVTPIYLAAERLSSKYA-----EQIVSGKET- 509

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +y++ti r + +++++++++ ++r+ +
CP001759_0 510 ---------FLKYTDTIMRHVSHISEIVDEFAKFARMPSA 540


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 4 0|=
-13 15 0|====
-12 41 21|=====*=====
-11 96 109|======================== *
-10 156 203|======================================= *
-9 196 210|================================================= *
-8 139 157|=================================== *
-7 106 99|========================*==
-6 79 57|==============*=====
-5 32 31|=======*
-4 21 16|===*==
-3 22 8|=*====
-2 6 4|*=
-1 3 2|*
0 4 1|*
1 0 0|
2 1 0|=
3 0 0|
4 0 0|
> 5 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 64.0605
P(chi-square) = 2.197e-10

Total sequences searched: 925

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: