Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
41 projects found  

9 accessions found for Spirosoma linguale DSM 74  

Data for CP001770  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001770.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001770_0095 CDS_98911-100176 43.6 2.3e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001770_0095 1/1 211 277 .. 1 87 [] 43.6 2.3e-13

Alignments of top-scoring domains:
CP001770_0095: domain 1 of 1, from 211 to 277: score 43.6, E = 2.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+ n+sHE+ TPL++++ ++lL+ ++ l+e +
CP001770_0 211 QQKQFTDNASHEMQTPLSVLSVELDLLQQ--------SEGLNEAD-- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ ++e++rl+++ + lL l++i++
CP001770_0 248 ----------LDRIHRSQQEIKRLSAMNQSLLLLAKIDNH 277


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-14 2 0|==
-13 4 0|====
-12 15 4|===*===========
-11 23 20|===================*===
-10 33 38|================================= *
-9 37 40|===================================== *
-8 24 30|======================== *
-7 14 18|============== *
-6 10 10|=========*
-5 7 5|====*==
-4 4 3|==*=
> -3 4 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 4.1325
P(chi-square) = 0.6588

Total sequences searched: 177

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: