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Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Stackebrandtia nassauensis DSM 44728  

Data for CP001778  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001778.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001778_1040 CDS_1115508-1119884 85.3 1.3e-23 1
CP001778_5165 CDS_5581970-5580333 84.8 1.7e-23 1
CP001778_3835 CDS_4172456-4171005 82.4 8.1e-23 1
CP001778_5055 CDS_5469239-5467749 81.7 1.3e-22 2
CP001778_2065 CDS_2221204-2219771 77.6 1.9e-21 1
CP001778_4817 CDS_5203607-5205358 73.4 2.9e-20 1
CP001778_5432 CDS_5870804-5868231 71.7 8.7e-20 1
CP001778_0711 CDS_761580-762602 71.5 1e-19 1
CP001778_1823 CDS_1938790-1940454 71.1 1.3e-19 1
CP001778_1420 CDS_1524617-1522053 70.4 2e-19 1
CP001778_0570 CDS_609322-610527 69.3 4.2e-19 1
CP001778_4442 CDS_4825761-4824727 61.3 7.9e-17 1
CP001778_5257 CDS_5678780-5680456 58.0 6.8e-16 1
CP001778_4761 CDS_5141651-5142868 52.9 1.9e-14 1
CP001778_5931 CDS_6379776-6380879 46.7 1.1e-12 1
CP001778_2076 CDS_2230207-2231649 46.3 1.4e-12 1
CP001778_0150 CDS_155871-157067 38.3 2.6e-10 1
CP001778_5842 CDS_6300536-6299334 32.7 9.6e-09 1
CP001778_4792 CDS_5174213-5175451 31.0 3e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001778_1040 1/1 1037 1105 .. 1 87 [] 85.3 1.3e-23
CP001778_5165 1/1 259 326 .. 1 87 [] 84.8 1.7e-23
CP001778_3835 1/1 235 301 .. 1 87 [] 82.4 8.1e-23
CP001778_5055 2/2 257 324 .. 1 87 [] 80.9 2.2e-22
CP001778_2065 1/1 251 318 .. 1 87 [] 77.6 1.9e-21
CP001778_4817 1/1 257 323 .. 1 87 [] 73.4 2.9e-20
CP001778_5432 1/1 122 186 .. 1 87 [] 71.7 8.7e-20
CP001778_0711 1/1 112 179 .. 1 87 [] 71.5 1e-19
CP001778_1823 1/1 303 370 .. 1 87 [] 71.1 1.3e-19
CP001778_1420 1/1 620 688 .. 1 87 [] 70.4 2e-19
CP001778_0570 1/1 153 219 .. 1 87 [] 69.3 4.2e-19
CP001778_4442 1/1 113 180 .. 1 87 [] 61.3 7.9e-17
CP001778_5257 1/1 327 391 .. 1 87 [] 58.0 6.8e-16
CP001778_4761 1/1 192 254 .. 1 87 [] 52.9 1.9e-14
CP001778_5931 1/1 142 206 .. 1 87 [] 46.7 1.1e-12
CP001778_2076 1/1 264 325 .. 1 87 [] 46.3 1.4e-12
CP001778_0150 1/1 163 229 .. 1 87 [] 38.3 2.6e-10
CP001778_5842 1/1 178 244 .. 1 87 [] 32.7 9.6e-09
CP001778_4792 1/1 211 269 .. 1 87 [] 31.0 3e-08

Alignments of top-scoring domains:
CP001778_1040: domain 1 of 1, from 1037 to 1105: score 85.3, E = 1.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHELRTPL++++++a lL e+ + ++ls++q+
CP001778_1 1037 YKSQFLANISHELRTPLNSLLLLARLLAENTE------QNLSPKQI- 1076

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +ti++++ ll Li+d+Ldls+ieag
CP001778_1 1077 -----------DFARTIHSAGSDLLTLIDDILDLSKIEAG 1105

CP001778_5165: domain 1 of 1, from 259 to 326: score 84.8, E = 1.7e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a++sHELRTPL++Irgyael ++ g + ++++
CP001778_5 259 RVRRFVADASHELRTPLASIRGYAELTRR-------GHESIGPDT-- 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l +i++e+ r+ L++dlL l+r+++g
CP001778_5 297 ----------RHALGRIESESTRMTGLVEDLLLLARLDSG 326

CP001778_3835: domain 1 of 1, from 235 to 301: score 82.4, E = 8.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++fl ++sHELRTPLt+I+g+ae L + + + +++
CP001778_3 235 RQRDFLLSVSHELRTPLTSIKGFAESLAD---------GVVDGDDT- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ t+l ea+rl+rL+ dlLdl+ri+a
CP001778_3 272 ----------RRVGGTMLAEADRLERLVTDLLDLARIGAD 301

CP001778_5055: domain 2 of 2, from 257 to 324: score 80.9, E = 2.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPLt++rg+ael + +++ ++ ++
CP001778_5 257 RMRRFVADASHELRTPLTTVRGFAELYRQ--------RADVDPVEV- 294

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++i++ea r+ L++dlL l+r++a+
CP001778_5 295 ----------AGLMRRIEDEATRMGLLVEDLLLLARLDAE 324

CP001778_2065: domain 1 of 1, from 251 to 318: score 77.6, E = 1.9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+++ gyael + ++ t+ +++
CP001778_2 251 RLRRFIADASHELRTPLATVGGYAELYESGG-------TPPGPPL-- 288

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++i+ e +r+ rL++dlL l+r+++
CP001778_2 289 ----------DRAMHRIRAENQRMARLVDDLLLLARLDQR 318

CP001778_4817: domain 1 of 1, from 257 to 323: score 73.4, E = 2.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ef+ ++ HELRTP+t++rg++elL + ++++r
CP001778_4 257 AQREFVDDAGHELRTPITVVRGHLELLGQ---------GIDDADER- 293

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ + +e++r++r+++dlL l++ +++
CP001778_4 294 ----------AETLRLVMDELDRMRRIVDDLLVLAKSGTP 323

CP001778_5432: domain 1 of 1, from 122 to 186: score 71.7, E = 8.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++an+sHELRTP++a+++++e L + + + + +
CP001778_5 122 QRRELVANVSHELRTPIAALQAMLENLAD---------GVAKPST-- 157

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ + ++erl rL+ +lLd sr++ag
CP001778_5 158 -----------QSLSAAVAQTERLGRLVTELLDVSRLDAG 186

CP001778_0711: domain 1 of 1, from 112 to 179: score 71.5, E = 1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++a +sH+LRTPL+++r+++e+L +++ ++e +
CP001778_0 112 RRRELVAWVSHDLRTPLAGLRALTEALDDGV--------VRDEAGV- 149

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey ++i++e+ r++rL++dl +lsri ag
CP001778_0 150 ----------AEYHRRIRDETMRMSRLVDDLFELSRINAG 179

CP001778_1823: domain 1 of 1, from 303 to 370: score 71.1, E = 1.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt++r++a+lL + + ++ ++
CP001778_1 303 LQRRFTSDVSHELRTPLTTVRMAADLLYD-------SKHDFPPTA-- 340

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e +++e++r ++L+ dlL++sr +ag
CP001778_1 341 ----------ARSTELLHDELNRFEELLGDLLEISRFDAG 370

CP001778_1420: domain 1 of 1, from 620 to 688: score 70.4, E = 2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRTPL++ ++++ L+ ++ + s+ +r
CP001778_1 620 MRTALLAAVSHDLRTPLASAKAAVAGLRGNG-------DMFSAADR- 658

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l t++++++rl+rL+++lLd+sr++ag
CP001778_1 659 ----------DELLLTADESLDRLDRLVSNLLDMSRLQAG 688

CP001778_0570: domain 1 of 1, from 153 to 219: score 69.3, E = 4.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+ HEL+TP+ a++++ae+L + + ++ +
CP001778_0 153 VRRDFVANVGHELKTPVGALQLLAEALAD---------AVDDPAAA- 189

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +i++e+ r++rL+++lL+lsr++
CP001778_0 190 ----------ARFTTRIQHESARMSRLVSELLELSRLQGA 219

CP001778_4442: domain 1 of 1, from 113 to 180: score 61.3, E = 7.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f++n+sHELRTPLt++r+ ++++l + ++ + ++
CP001778_4 113 AQRRFVSNASHELRTPLTVMRTEIDVALSN--------PDDDIAEL- 150

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ e++++ +r ++Li+ lL l+r+ea+
CP001778_4 151 ----------RQMGEVVRDGCDRVNDLIESLLWLARAEAE 180

CP001778_5257: domain 1 of 1, from 327 to 391: score 58.0, E = 6.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+ +HELRTPL+ I gy+e++ + + ++
CP001778_5 327 QRRQLIADSAHELRTPLSNIHGYLEAIAD---------GIVPASP-- 362

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++++++e+ l r+i+dl+ l+ +ag
CP001778_5 363 -----------EHIDSLREESTLLARIIDDLRLLALSDAG 391

CP001778_4761: domain 1 of 1, from 192 to 254: score 52.9, E = 1.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+a+++HELR PL+ +r+ +e++++ ++++
CP001778_4 192 KQRSFVADAAHELRSPLANMRTELEVAER----------IGAPDDL- 227

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l ++erl+r+ +dlL l+r++
CP001778_4 228 -------------VADLLTDVERLSRMTEDLLLLARMDDA 254

CP001778_5931: domain 1 of 1, from 142 to 206: score 46.7, E = 1.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPL++ ++ ++++++ +++ +
CP001778_5 142 EQQRFAANVSHELRTPLAVTQTILDVARN----------DRDGDN-- 176

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++++++ r +L + lL lsr++
CP001778_5 177 ----------DELVDRLHAVNSRAIDLTEALLLLSRADRR 206

CP001778_2076: domain 1 of 1, from 264 to 325: score 46.3, E = 1.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELR PL+ +r+ +e++ ++
CP001778_2 264 QQRRFIADASHELRSPLAILRAQLEVAGS-------------HPE-- 295

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+++ rl++L dlL l+r++ag
CP001778_2 296 ----------LLDIDATLNDVVRLQSLATDLLLLARLDAG 325

CP001778_0150: domain 1 of 1, from 163 to 229: score 38.3, E = 2.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+an++HELRTPLt++r+++++ l+ +e + +++
CP001778_0 163 SQRLFTANAAHELRTPLTTMRTAIDVTLD---------GEPDRDEL- 199

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ +er +r ++ lL l+ a
CP001778_0 200 ----------LAMIADLDTTVERSRRTLDGLLLLAGSHAA 229

CP001778_5842: domain 1 of 1, from 178 to 244: score 32.7, E = 9.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPLt r+++el+ ++ +s++
CP001778_5 178 GQRRFVANASHELRTPLTLNRALVELAMH--------RESASADV-- 214

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +l r ++Li lL l+r e++
CP001778_5 215 ----------KRLGTDLLAINARHEKLIAGLLLLARSEHE 244

CP001778_4792: domain 1 of 1, from 211 to 269: score 31.0, E = 3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +e +a+l+H LRTPLta+r++++ L +
CP001778_4 211 SEREEVADLAHRLRTPLTALRMNIDNLGD------------------ 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++ l +++l +r
CP001778_4 240 ----------TASAAPLRSSVDTLAGHVDELIRTARRPVR 269


Histogram of all scores:
score obs exp (one = represents 22 sequences)
----- --- ---
-15 1 0|=
-14 17 0|=
-13 52 4|*==
-12 275 145|======*======
-11 600 756|============================ *
-10 1082 1402|================================================== *
-9 1296 1448|==========================================================*
-8 1123 1084|=================================================*==
-7 802 683|===============================*=====
-6 479 393|=================*====
-5 275 215|=========*===
-4 159 115|=====*==
-3 84 60|==*=
-2 56 32|=*=
-1 24 16|*=
0 17 8|*
1 4 4|*
2 5 2|*
3 2 1|*
4 2 0|=
5 2 0|=
6 0 0|
7 0 0|
> 8 22 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 347.0128
P(chi-square) = 0

Total sequences searched: 6379

Whole sequence top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: