Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
4 projects found  

2 accessions found for Streptobacillus moniliformis DSM 12112  

Data for CP001779  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001779.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001779_1423 CDS_1651914-1653248 60.7 2.6e-17 1
CP001779_0708 CDS_827479-825953 59.8 4.6e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001779_1423 1/1 226 292 .. 1 87 [] 60.7 2.6e-17
CP001779_0708 1/1 271 348 .. 1 87 [] 59.8 4.6e-17

Alignments of top-scoring domains:
CP001779_1423: domain 1 of 1, from 226 to 292: score 60.7, E = 2.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f +n+sHEL+TP+++I++ ++ le + + e++
CP001779_1 226 REKQFNSNVSHELKTPISVILAESSYSLE---------HVNNLEEA- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +e+i+r+++ +++Li++++ ls+ie+
CP001779_1 263 ----------KESFEVIKRQSKKMSELISQIMMLSKIENT 292

CP001779_0708: domain 1 of 1, from 271 to 348: score 59.8, E = 4.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldk..v.lagdtelsee
+s+f++++sHELRTP+++I+gyael+ +++ k+ ++ + t+++e
CP001779_0 271 KQSRFISDVSHELRTPISVIKGYAELINRRYIKsfTdEEKGTPKNEL 317

qrlpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e +e+i +e+e + +Li lL lsr ++
CP001779_0 318 LI------------ESTESIVKESENMTKLITSLLFLSRGDEK 348


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-15 1 0|=
-14 8 0|==
-13 28 1|*=====
-12 63 32|======*======
-11 154 169|=============================== *
-10 265 315|===================================================== *
-9 262 325|===================================================== *
-8 240 243|================================================*
-7 168 153|==============================*===
-6 98 88|=================*==
-5 47 48|=========*
-4 42 25|====*====
-3 25 13|==*==
-2 15 7|=*=
-1 8 3|*=
0 3 1|*
1 4 1|*
> 2 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 80.0078
P(chi-square) = 5.003e-13

Total sequences searched: 1434

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: