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264 projects found  

1 accessions found for Pectobacterium wasabiae WPP163  

Data for CP001790  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001790.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001790_3173 CDS_3604282-3602960 92.6 7.3e-26 1
CP001790_3417 CDS_3908815-3911601 88.4 1.1e-24 1
CP001790_3083 CDS_3502648-3499793 78.0 1e-21 1
CP001790_0291 CDS_342104-344473 74.9 7.6e-21 1
CP001790_1169 CDS_1335934-1337385 70.9 1e-19 1
CP001790_0126 CDS_147564-146194 66.4 1.9e-18 1
CP001790_1245 CDS_1420317-1418944 60.5 9.3e-17 1
CP001790_4327 CDS_4943345-4944394 60.3 1e-16 1
CP001790_4352 CDS_4972485-4973834 58.1 4.4e-16 1
CP001790_3933 CDS_4485752-4484391 56.7 1.1e-15 1
CP001790_0957 CDS_1089793-1091160 50.3 7.3e-14 1
CP001790_3877 CDS_4420630-4421724 47.2 5.5e-13 1
CP001790_2472 CDS_2819264-2820577 42.6 1.1e-11 1
CP001790_0840 CDS_946338-947837 27.6 1.9e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001790_3173 1/1 203 269 .. 1 87 [] 92.6 7.3e-26
CP001790_3417 1/1 289 354 .. 1 87 [] 88.4 1.1e-24
CP001790_3083 1/1 468 533 .. 1 87 [] 78.0 1e-21
CP001790_0291 1/1 282 347 .. 1 87 [] 74.9 7.6e-21
CP001790_1169 1/1 252 320 .. 1 87 [] 70.9 1e-19
CP001790_0126 1/1 238 300 .. 1 87 [] 66.4 1.9e-18
CP001790_1245 1/1 234 298 .. 1 87 [] 60.5 9.3e-17
CP001790_4327 1/1 129 186 .. 1 79 [. 60.3 1e-16
CP001790_4352 1/1 236 302 .. 1 87 [] 58.1 4.4e-16
CP001790_3933 1/1 233 293 .. 1 87 [] 56.7 1.1e-15
CP001790_0957 1/1 236 299 .. 1 87 [] 50.3 7.3e-14
CP001790_3877 1/1 143 203 .. 1 87 [] 47.2 5.5e-13
CP001790_2472 1/1 211 271 .. 1 87 [] 42.6 1.1e-11
CP001790_0840 1/1 281 347 .. 1 87 [] 27.6 1.9e-07

Alignments of top-scoring domains:
CP001790_3173: domain 1 of 1, from 203 to 269: score 92.6, E = 7.3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e+++e ++l++ r
CP001790_3 203 ARRNFFANVSHELRTPLTVLQGYLEMMQE---------ETLDAALR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+t++++++r++ L+ +lL+lsriea
CP001790_3 240 ----------GKALNTMQEQTRRMDGLVKQLLTLSRIEAA 269

CP001790_3417: domain 1 of 1, from 289 to 354: score 88.4, E = 1.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l+ t l+ q
CP001790_3 289 IKSEFLANMSHELRTPLNGVIGFTRQTLK---------TSLNTTQ-- 324

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl ti+r+a+ ll++ind+Ld+s++eag
CP001790_3 325 ----------TDYLLTIERSANNLLNIINDVLDFSKLEAG 354

CP001790_3083: domain 1 of 1, from 468 to 533: score 78.0, E = 1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ l+ +
CP001790_3 468 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KSLPQDA-- 503

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +++ ll++i+d+Ld+s+ie++
CP001790_3 504 ----------NRLVLAMNNSSSLLLKIISDILDFSKIESE 533

CP001790_0291: domain 1 of 1, from 282 to 347: score 74.9, E = 7.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ f++++sHELRTPL++I g++ +Ll+ t l++eq
CP001790_0 282 EKTTFISTISHELRTPLNGIVGLSRILLD---------TQLDPEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a l ++ nd+ ++ + e
CP001790_0 318 ----------QKYLKTIHVSAITLGNIFNDVIEMDKQERR 347

CP001790_1169: domain 1 of 1, from 252 to 320: score 70.9, E = 1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ efl+++sHEL+TPL+++r +elL +e+ ++l+++q
CP001790_1 252 QRHEFLRHISHELKTPLASLREGTELLADEV------VGPLTADQ-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +e++++++++ll+Li++lLd+ r a
CP001790_1 291 ----------KEVVEILDSSSRHLLQLIDQLLDYNRKLAD 320

CP001790_0126: domain 1 of 1, from 238 to 300: score 66.4, E = 1.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l+++sHELRTPLt +++++ lL++++ +e +e
CP001790_0 238 AQQRLLSDISHELRTPLTRLQLATALLRRRQ-------GEGNE---- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i+ e++rl+++indlL lsr ++
CP001790_0 274 -------------LNRIETETQRLDSMINDLLVLSRNQHK 300

CP001790_1245: domain 1 of 1, from 234 to 298: score 60.5, E = 9.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a++sHELRTPL+++rg +e+L++++ + ++
CP001790_1 234 SRRAFMADVSHELRTPLAVLRGELEALQDGV-------RKPDAHS-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++++e+ l +L++dl +l+ + g
CP001790_1 272 -------------LHSLQSEVATLTKLVDDLHQLTLSDRG 298

CP001790_4327: domain 1 of 1, from 129 to 186: score 60.3, E = 1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CP001790_4 129 AARDLVRGLAHEIKNPLGGLRGAAQLLAK----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
CP001790_4 165 ----------TEYTKVIIEQADRLRNLVDRLL 186

CP001790_4352: domain 1 of 1, from 236 to 302: score 58.1, E = 4.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PL+a++ +e+++ ++ +e r
CP001790_4 236 RERRFTSDAAHELRSPLAALKVQTEVAQL---------AHDDEVMR- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l +++ ++r rL+++lL+lsr++a+
CP001790_4 273 ----------RHALMNLDKGIDRATRLVDQLLTLSRLDAE 302

CP001790_3933: domain 1 of 1, from 233 to 293: score 56.7, E = 1.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ + e+
CP001790_3 233 DRTLLMAGVSHDLRTPLTRIRLATEMMGK--------------ED-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++Ld+ r +++
CP001790_3 264 ----------DYLAESINKDIEECNAIIEQFLDYLRTGQE 293

CP001790_0957: domain 1 of 1, from 236 to 299: score 50.3, E = 7.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l ++sHELR PL+ +++++ l + +++ +
CP001790_0 236 AREQLLHDVSHELRSPLARLQLAIGLVRQ------------NPDNL- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i+rea ++++i +lL+lsr e+
CP001790_0 270 ----------ENSLQRIEREALLMDKMIGELLTLSRTEHS 299

CP001790_3877: domain 1 of 1, from 143 to 203: score 47.2, E = 5.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a+++HELRTPL++Ir+++el + q+
CP001790_3 143 RDRQFTADVAHELRTPLAGIRLHLELHQQ---------------QH- 173

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++ ++ + + +++lL l+r +++
CP001790_3 174 ----------QIDCSSLIKRIDKMVKTVEQLLLLARVGQE 203

CP001790_2472: domain 1 of 1, from 211 to 271: score 42.6, E = 1.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ n++HELRTPL +r + + + l+e+++
CP001790_2 211 SKKQLIDNIAHELRTPLVRLRYRLAMSDN-----------LTEDEQ- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + r++ +l++Li++lL+++r++ +
CP001790_2 246 --------------QALNRDIGQLEALIDELLTYARLDRP 271

CP001790_0840: domain 1 of 1, from 281 to 347: score 27.6, E = 1.9e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++++HELRTPLt ++ + L e +t l+ +
CP001790_0 281 QVRNTSSHVAHELRTPLTHLQNRLFNLTE--------RTGLDNDI-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ + +e++ +l L + ++ + ie+g
CP001790_0 318 ----------RDELNLAVDEVHKILGLFRTVMRIGEIESG 347


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-15 3 0|=
-14 22 0|==
-13 47 3|*===
-12 208 101|=======*=======
-11 459 525|================================= *
-10 783 975|======================================================== *
-9 821 1007|==========================================================*
-8 736 754|=====================================================*
-7 527 475|=================================*====
-6 311 273|===================*===
-5 206 150|==========*====
-4 135 80|=====*====
-3 61 42|==*==
-2 42 22|=*=
-1 28 11|*=
0 13 6|*
1 9 3|*
2 9 1|*
3 1 0|=
> 4 16 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 318.9062
P(chi-square) = 0

Total sequences searched: 4437

Whole sequence top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: