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Classification of phyla is from NCBI page
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1 accessions found for Fibrobacter succinogenes subsp. succinogenes S85  

Data for CP001792  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001792.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001792_2854 CDS_3562078-3566067 92.1 7.1e-26 1
CP001792_1168 CDS_1457533-1453022 87.7 1.3e-24 1
CP001792_2357 CDS_2949727-2953923 81.9 5.5e-23 1
CP001792_1679 CDS_2087158-2088522 81.3 8e-23 2
CP001792_1245 CDS_1557798-1554016 80.5 1.4e-22 1
CP001792_1305 CDS_1634891-1636810 80.3 1.5e-22 1
CP001792_1773 CDS_2211731-2215366 79.7 2.2e-22 1
CP001792_1779 CDS_2222945-2225209 75.0 4.9e-21 1
CP001792_2864 CDS_3576857-3574287 71.5 4.8e-20 1
CP001792_0431 CDS_502356-504404 67.9 5e-19 1
CP001792_1776 CDS_2218314-2220698 64.9 3.6e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001792_2854 1/1 584 649 .. 1 87 [] 92.1 7.1e-26
CP001792_1168 1/1 985 1051 .. 1 87 [] 87.7 1.3e-24
CP001792_2357 1/1 889 955 .. 1 87 [] 81.9 5.5e-23
CP001792_1679 2/2 236 302 .. 1 87 [] 80.9 1.1e-22
CP001792_1245 1/1 886 952 .. 1 87 [] 80.5 1.4e-22
CP001792_1305 1/1 410 477 .. 1 87 [] 80.3 1.5e-22
CP001792_1773 1/1 701 767 .. 1 87 [] 79.7 2.2e-22
CP001792_1779 1/1 371 437 .. 1 87 [] 75.0 4.9e-21
CP001792_2864 1/1 481 547 .. 1 87 [] 71.5 4.8e-20
CP001792_0431 1/1 458 525 .. 1 87 [] 67.9 5e-19
CP001792_1776 1/1 416 482 .. 1 87 [] 64.9 3.6e-18

Alignments of top-scoring domains:
CP001792_2854: domain 1 of 1, from 584 to 649: score 92.1, E = 7.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP++aI+g+a+l++e t+l+e q
CP001792_2 584 AKSEFLANMSHEIRTPMNAIIGMAHLIQE---------TKLDERQ-- 619

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++e+i ++a +ll +in++Ld+s+iea+
CP001792_2 620 ----------LGFIERISHAATSLLGIINNILDFSKIEAN 649

CP001792_1168: domain 1 of 1, from 985 to 1051: score 87.7, E = 1.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fl n+sH++RTP++aI+g++ l+ e + + eq+
CP001792_1 985 AKTTFLNNMSHDIRTPMNAIIGFTGLAAE---------HIDNKEQV- 1021

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl++i +++e+ll+Lind+Ld+srie+g
CP001792_1 1022 ----------ADYLSKIGQSSEHLLALINDVLDMSRIESG 1051

CP001792_2357: domain 1 of 1, from 889 to 955: score 81.9, E = 5.5e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fl n+sH++RTP++aI+gy+el+ + + eq+
CP001792_2 889 AKTMFLNNMSHDIRTPMNAIIGYTELATI---------HIGNKEQV- 925

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l +i+ ++++ll+Lind+Ld+srie+g
CP001792_2 926 ----------RNFLGKIELSSNHLLSLINDVLDMSRIESG 955

CP001792_1679: domain 2 of 2, from 236 to 302: score 80.9, E = 1.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+an+sHEL+TPLt+I+gyael+++ + + +e++
CP001792_1 236 MRDEFTANASHELKTPLTSISGYAELIEN---------GMAKPEDV- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +i++ea rll++ nd+++ls+++a+
CP001792_1 273 ----------KRFAGKIHKEAGRLLSIANDIMTLSKLDAP 302

CP001792_1245: domain 1 of 1, from 886 to 952: score 80.5, E = 1.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fl+n+sH++RTP++aI g+++l+ + + +q+
CP001792_1 886 AKTTFLSNMSHDIRTPMNAIVGFTDLAMA---------HIDEKDQV- 922

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+++ +++++ll+Lind+Ld+srie+g
CP001792_1 923 ----------LDYLHKLGQSSNHLLSLINDVLDMSRIESG 952

CP001792_1305: domain 1 of 1, from 410 to 477: score 80.3, E = 1.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++ HEL+TPLtaI++yaelL++ + +see++
CP001792_1 410 KRQDFVSAITHELKTPLTAIKMYAELLQN--------SWVASEEKK- 447

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y i +ea+rl+rLi+++L ls+++ +
CP001792_1 448 ----------QKYYGQIASEADRLSRLIQNVLNLSKLDGN 477

CP001792_1773: domain 1 of 1, from 701 to 767: score 79.7, E = 2.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fl+n+sH++RTP++aI+g++ l+l+ +l+++ +
CP001792_1 701 AKTMFLSNMSHDIRTPMNAIIGFTNLALN----------NLDDPVL- 736

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ yl++ ++ +ll+Lind+Ld+srie+g
CP001792_1 737 ---------VKNYLNKTVVSSTHLLSLINDILDMSRIESG 767

CP001792_1779: domain 1 of 1, from 371 to 437: score 75.0, E = 4.9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fl n+sH++RTP++aI+gy+e +++ + s ++
CP001792_1 371 AKSKFLLNMSHDIRTPMNAIIGYSERAER---------HLDSTADV- 407

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i+ ++ +ll+Li+++Ld+++ie+g
CP001792_1 408 ----------QDALKKIRISGGYLLQLIEEVLDMAKIESG 437

CP001792_2864: domain 1 of 1, from 481 to 547: score 71.5, E = 4.8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fl n+sH++RTP++a++g++ ++++ + e++
CP001792_2 481 AKTTFLFNMSHDIRTPMNAVMGFTAMAKK---------HIEEKETI- 517

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl++i+ ++++ll+L+n++L++srie+g
CP001792_2 518 ----------KKYLDKIDIAGKQLLSLVNQVLEMSRIESG 547

CP001792_0431: domain 1 of 1, from 458 to 525: score 67.9, E = 5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k fl+++sHEL+TPLt+I+++ae++ + + ++
CP001792_0 458 MKANFLSSVSHELKTPLTSIKMFAEMMAR---------GRVQKVEK- 494

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ey i +ea rl++Li +L ++r+e+g
CP001792_0 495 ---------VQEYSGLIGKEATRLENLIGAILNYTRMEHG 525

CP001792_1776: domain 1 of 1, from 416 to 482: score 64.9, E = 3.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fl n+sH++RTPL+a++g+++++ + + +++ ++
CP001792_1 416 AKSAFLFNMSHDIRTPLNAMIGFTDMAVK----------NIDDKAKA 452

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l + + ++e+ll+Lind+Ld+srie+g
CP001792_1 453 ----------LDCLGKSKLSSEHLLSLINDVLDMSRIESG 482


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 1 0|=
-14 12 0|==
-13 31 2|*==
-12 117 70|======*====
-11 326 365|============================== *
-10 551 678|=================================================== *
-9 620 700|========================================================= *
-8 532 524|===============================================*=
-7 359 330|=============================*===
-6 233 190|=================*====
-5 144 104|=========*====
-4 74 55|====*==
-3 32 29|==*
-2 20 15|=*
-1 15 8|*=
0 1 4|*
1 1 2|*
2 1 1|*
3 1 0|=
4 1 0|=
> 5 13 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 108.7029
P(chi-square) = 3.325e-18

Total sequences searched: 3085

Whole sequence top hits:
tophits_s report:
Total hits: 11
Satisfying E cutoff: 11
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 11
Satisfying E cutoff: 11
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: