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264 projects found  

2 accessions found for Nitrosococcus halophilus Nc4  

Data for CP001798  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001798.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001798_1336 CDS_1421979-1426478 97.0 3.4e-27 1
CP001798_2154 CDS_2360348-2361658 89.9 3.5e-25 1
CP001798_1863 CDS_2042695-2040329 71.7 5.3e-20 1
CP001798_0559 CDS_609744-611411 68.8 3.4e-19 1
CP001798_2964 CDS_3212559-3214046 67.9 6e-19 1
CP001798_2096 CDS_2307493-2309085 64.3 6.7e-18 1
CP001798_0687 CDS_737406-735493 63.7 9.6e-18 1
CP001798_3577 CDS_3896930-3899233 62.0 2.9e-17 1
CP001798_1916 CDS_2104908-2102164 60.7 6.7e-17 1
CP001798_3613 CDS_3935301-3937502 54.8 3.1e-15 2
CP001798_0112 CDS_129147-127669 52.5 1.4e-14 1
CP001798_1387 CDS_1484114-1482588 51.3 3e-14 1
CP001798_1368 CDS_1463369-1462269 51.0 3.9e-14 1
CP001798_3346 CDS_3643744-3645252 48.4 2e-13 1
CP001798_3334 CDS_3631425-3633515 45.9 1.1e-12 1
CP001798_1372 CDS_1467167-1465524 42.7 8.7e-12 1
CP001798_1782 CDS_1946295-1942207 41.3 2.2e-11 1
CP001798_1609 CDS_1736263-1735103 35.8 7.9e-10 1
CP001798_0685 CDS_735026-733323 27.6 1.6e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001798_1336 1/1 272 337 .. 1 87 [] 97.0 3.4e-27
CP001798_2154 1/1 200 267 .. 1 87 [] 89.9 3.5e-25
CP001798_1863 1/1 402 468 .. 1 87 [] 71.7 5.3e-20
CP001798_0559 1/1 330 396 .. 1 87 [] 68.8 3.4e-19
CP001798_2964 1/1 265 330 .. 1 87 [] 67.9 6e-19
CP001798_2096 1/1 301 369 .. 1 87 [] 64.3 6.7e-18
CP001798_0687 1/1 415 483 .. 1 87 [] 63.7 9.6e-18
CP001798_3577 1/1 404 471 .. 1 87 [] 62.0 2.9e-17
CP001798_1916 1/1 545 611 .. 1 87 [] 60.7 6.7e-17
CP001798_0112 1/1 269 339 .. 1 87 [] 52.5 1.4e-14
CP001798_1387 1/1 285 353 .. 1 87 [] 51.3 3e-14
CP001798_1368 1/1 143 211 .. 1 87 [] 51.0 3.9e-14
CP001798_3613 1/2 498 570 .. 1 87 [] 49.5 1e-13
CP001798_3346 1/1 271 337 .. 1 87 [] 48.4 2e-13
CP001798_3334 1/1 470 540 .. 1 87 [] 45.9 1.1e-12
CP001798_1372 1/1 316 386 .. 1 87 [] 42.7 8.7e-12
CP001798_1782 1/1 994 1059 .. 1 87 [] 41.3 2.2e-11
CP001798_1609 1/1 161 226 .. 1 82 [. 35.8 7.9e-10
CP001798_0685 1/1 335 406 .. 1 87 [] 27.6 1.6e-07

Alignments of top-scoring domains:
CP001798_1336: domain 1 of 1, from 272 to 337: score 97.0, E = 3.4e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef+an+sHELRTPL++++g++elL++ l+++q
CP001798_1 272 IKGEFAANVSHELRTPLNGVLGMLELLRN---------MGLTPKQ-- 307

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey++++ +++e ll+Li ++Ld+srie+g
CP001798_1 308 ----------REYVQVACNSGETLLELIGNILDFSRIESG 337

CP001798_2154: domain 1 of 1, from 200 to 267: score 89.9, E = 3.5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPLt++rgy+e+L+ + ++ ++e
CP001798_2 200 MRRDFVANVSHELRTPLTVLRGYLEVLEGG--------GNGNPEV-- 236

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++t+++++ r+++Li+dlL lsr+e+
CP001798_2 237 ---------WVRSFKTMQDQVARMQHLIEDLLMLSRLENR 267

CP001798_1863: domain 1 of 1, from 402 to 468: score 71.7, E = 5.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla+l+HELR+PL+ I +++L+ ++e +
CP001798_1 402 RKDEFLATLAHELRNPLAPIANSLQILKQ---------VGNNPEAL- 438

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++ +r++++l +L++dlLd sri g
CP001798_1 439 ----------EKAVSISERQLQHLVHLVEDLLDVSRITRG 468

CP001798_0559: domain 1 of 1, from 330 to 396: score 68.8, E = 3.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+++HE+R+PL aI+ +++lL+e +++l++ +
CP001798_0 330 SLGRLTASIAHEIRNPLGAISHASQLLRE--------SSTLNPSE-- 366

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++le+il+ r +++i ++L+lsr +
CP001798_0 367 ----------RRLLEIILNHCGRVNDIIKNVLQLSRRKHS 396

CP001798_2964: domain 1 of 1, from 265 to 330: score 67.9, E = 6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++a+++HELR+PL++Ir+ ++ L++ + +++q
CP001798_2 265 AVGELAASIAHELRNPLAGIRMSCSNLQK---------EISNPDQ-- 300

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ i +e++rl rL+n+lLd ++ +
CP001798_2 301 ----------AQRLDLISSELKRLTRLLNNLLDQAKHTPQ 330

CP001798_2096: domain 1 of 1, from 301 to 369: score 64.3, E = 6.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fl+++sHEL+TPL+a+r aelL +++ + l+++q
CP001798_2 301 AKTKFLRHVSHELKTPLAALREGAELLCDQVT------GRLNPQQ-- 339

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +++++ + rl++Li+d+L +s ++++
CP001798_2 340 ----------LEVARILRDNSLRLQKLIEDMLRFSLAGSN 369

CP001798_0687: domain 1 of 1, from 415 to 483: score 63.7, E = 9.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH+LR PL +I+g++ +L++ l + + eq+
CP001798_0 415 ELERFIYTVSHDLRSPLITIKGFSGMLKRSL-------SQGDREQM- 453

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i+ +a+ ++ L++dlL+lsri+
CP001798_0 454 ----------QGDIKRIQAAADKMQLLLDDLLELSRIGRL 483

CP001798_3577: domain 1 of 1, from 404 to 471: score 62.0, E = 2.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla l+HELR+PL Ir +++lL+ +e s +++
CP001798_3 404 RKDEFLALLAHELRNPLVPIRNAVQLLKL--------QSEPSLPHL- 441

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i+r++++l rL++dlLd +ri g
CP001798_3 442 ----------QQACGLIERQLNHLTRLVDDLLDVARITRG 471

CP001798_1916: domain 1 of 1, from 545 to 611: score 60.7, E = 6.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+l HELR+PL+ I ++el+++ l + ++ q
CP001798_1 545 CKNEFLAMLGHELRNPLAPICNAVELMRMHL--------HHPAIQ-- 581

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i+r+a++l rL+ndlL +ri +g
CP001798_1 582 ----------SKSIDIIDRQAKHLTRLVNDLLNVARIVTG 611

CP001798_0112: domain 1 of 1, from 269 to 339: score 52.5, E = 1.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e+++ l+HEL++PLta+++y+e++l+ ++++ s+e++
CP001798_0 269 TAGEMASELAHELKQPLTAVSTYIEACLR-----MLQRGIVSPEHL- 309

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e le ++++ +r +++i++l+d+ r ++
CP001798_0 310 ----------VETLENAINQNQRADEIIRRLRDFIRSRET 339

CP001798_1387: domain 1 of 1, from 285 to 353: score 51.3, E = 3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL a+ g++++L e++ +e +e+
CP001798_1 285 ELEAFSYSVSHDLRAPLRAMTGFSKVLWEDY-------GEVLDEDG- 323

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl++i+ +++r L++ lL+lsri
CP001798_1 324 ----------KHYLSRIQGASQRTGLLLDGLLQLSRINRH 353

CP001798_1368: domain 1 of 1, from 143 to 211: score 51.0, E = 3.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L PL ++ ya+lL +++ ++ l+++
CP001798_1 143 ELEQFAYVASHDLQEPLRMVSSYAQLLARRY------RGQLDSDA-- 181

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++e + + a r+++LindlL +sr ++
CP001798_1 182 ----------DEFIEFMVDGATRMQALINDLLAYSRVGTK 211

CP001798_3613: domain 1 of 2, from 498 to 570: score 49.5, E = 1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L++++ +l + ++
CP001798_3 498 AWGEVARRLAHEIKNPLTPIQLSAERLRRKY-------LNLLPADQT 537

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
L ++++ti+ ++e + +++n + +++r a
CP001798_3 538 QLL-------DRLTHTIIAQVEAMKEMVNAFSEYARNPAL 570

CP001798_3346: domain 1 of 1, from 271 to 337: score 48.4, E = 2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a+ +HEL TPL+++ g a+ Ll+ +l+
CP001798_3 271 AIGQLAAGTAHELGTPLSVVDGKAQRLLR--------LRDLPLRV-- 307

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ i+++++r+++++++l+d+ r+
CP001798_3 308 ----------TEGLQEIRDAVKRMEHIVRQLMDFGRATPL 337

CP001798_3334: domain 1 of 1, from 470 to 540: score 45.9, E = 1.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
se++a+l+HEL++PLtaI ++a+++l l++++ + e+
CP001798_3 470 LASELTAGLAHELNQPLTAITTNAHTCLQ-----LLHSGMVNMEK-- 509

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++e+le + r++er +++ l+ l r +
CP001798_3 510 ---------FEEILEEVTRQSERAGEIVHHLRALVRKTEY 540

CP001798_1372: domain 1 of 1, from 316 to 386: score 42.7, E = 8.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a ++HEL++PL aI +y++++l+ l+ ++ +e q l
CP001798_1 316 TLGEMAAEIAHELNQPLGAITTYSDICLRTLE------PHSPESQPL 356

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++le i +aer ++i+ l+ + r ++
CP001798_1 357 ----------RDILEEIAMQAERAGKIIRHLRNFVRKKEQ 386

CP001798_1782: domain 1 of 1, from 994 to 1059: score 41.3, E = 2.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fla++sH+LR+PL +++++ + L e +l ++++
CP001798_1 994 HKSQFLATASHDLRQPLQTLSFLNDSLTE----------KLKDPEI- 1029

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++++ ++ + +L+n lLd+ ++eag
CP001798_1 1030 ----------RRLIDQQGALLRNMGDLLNTLLDINKLEAG 1059

CP001798_1609: domain 1 of 1, from 161 to 226: score 35.8, E = 7.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a+l+HEL++PL+aI y+e++l+ l+++++++ +++
CP001798_1 161 LAGGMAAGLAHELNQPLAAIVSYSEACLN-----LLHSGKAGTPKL- 201

peLRledpeyreyletilreaerllrLindlLdls<-*
++ e+i ++++r ++ +l dl+
CP001798_1 202 ----------IKIMERIVEQGQRAGKITHRLKDLT 226

CP001798_0685: domain 1 of 1, from 335 to 406: score 27.6, E = 1.6e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
++e+ +l+HE ++P+taI+ y+ +++ ag + +
CP001798_0 335 TLGELGTTLAHEVNQPITAIINYVRACQQ----MiMAGKGQVTQTI- 376

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ ++ eaer ++i l++++r ++
CP001798_0 377 -----------CELMDKTVAEAERAASIIHHLREFARTGEL 406


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-15 4 0|=
-14 22 0|==
-13 60 2|*====
-12 195 85|=======*=========
-11 380 444|================================ *
-10 571 824|================================================ *
-9 633 851|===================================================== *
-8 674 637|=====================================================*===
-7 437 401|=================================*===
-6 294 231|===================*=====
-5 178 126|==========*====
-4 128 67|=====*=====
-3 52 35|==*==
-2 35 18|=*=
-1 26 9|*==
0 12 5|*
1 13 2|*=
2 8 1|*
3 2 0|=
4 1 0|=
5 0 0|
6 1 0|=
> 7 23 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 435.8842
P(chi-square) = 0

Total sequences searched: 3749

Whole sequence top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: