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Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Halothiobacillus neapolitanus c2  

Data for CP001801  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001801.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001801_0133 CDS_130917-128341 99.5 4.4e-28 1
CP001801_2018 CDS_2211521-2208018 87.2 1.3e-24 1
CP001801_2215 CDS_2435205-2436623 82.1 3.6e-23 1
CP001801_1550 CDS_1724015-1727551 66.6 8.8e-19 1
CP001801_2218 CDS_2440449-2438803 60.4 5.2e-17 1
CP001801_0254 CDS_263203-262058 58.7 1.6e-16 1
CP001801_2053 CDS_2250742-2249291 54.0 3.4e-15 1
CP001801_2033 CDS_2230302-2227852 49.2 7.8e-14 1
CP001801_2021 CDS_2213831-2215792 46.9 3.5e-13 1
CP001801_0767 CDS_848857-847412 42.2 7.2e-12 1
CP001801_0205 CDS_212879-214294 41.8 9.4e-12 1
CP001801_1949 CDS_2135081-2136511 39.6 4.1e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001801_0133 1/1 337 405 .. 1 87 [] 99.5 4.4e-28
CP001801_2018 1/1 760 828 .. 1 87 [] 87.2 1.3e-24
CP001801_2215 1/1 229 296 .. 1 87 [] 82.1 3.6e-23
CP001801_1550 1/1 681 747 .. 1 87 [] 66.6 8.8e-19
CP001801_2218 1/1 325 390 .. 1 87 [] 60.4 5.2e-17
CP001801_0254 1/1 136 193 .. 1 79 [. 58.7 1.6e-16
CP001801_2053 1/1 266 331 .. 1 87 [] 54.0 3.4e-15
CP001801_2033 1/1 510 582 .. 1 87 [] 49.2 7.8e-14
CP001801_2021 1/1 428 495 .. 1 87 [] 46.9 3.5e-13
CP001801_0767 1/1 258 324 .. 1 87 [] 42.2 7.2e-12
CP001801_0205 1/1 239 300 .. 1 87 [] 41.8 9.4e-12
CP001801_1949 1/1 254 319 .. 1 87 [] 39.6 4.1e-11

Alignments of top-scoring domains:
CP001801_0133: domain 1 of 1, from 337 to 405: score 99.5, E = 4.4e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+f+an+sHELRTPL+aI+gy+e+Llee+ ++ + q
CP001801_0 337 TKSQFVANMSHELRTPLNAIIGYSEILLEES-------EDDGNTQ-- 374

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ le+il+++++ll+L+nd+Ld+srieag
CP001801_0 375 ---------YAPDLERILNSGKHLLALVNDILDISRIEAG 405

CP001801_2018: domain 1 of 1, from 760 to 828: score 87.2, E = 1.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fl+++sHELRTPL+aI+g+a+l+ + ++++l+e+q
CP001801_2 760 AKSMFLSSMSHELRTPLNAILGFAQLMAA------SRREPLTEKQ-- 798

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ il+++++ll Lind+L l++ieag
CP001801_2 799 ----------NGFVAHILKAGQHLLTLINDVLNLAKIEAG 828

CP001801_2215: domain 1 of 1, from 229 to 296: score 82.1, E = 3.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPLt++ gy+e+Ll+ ++e + ++
CP001801_2 229 VRQDFVANVSHELRTPLTVLAGYLETLLD--------SEEDTQGEM- 266

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l +++++er++r+++dlL lsr+e+
CP001801_2 267 ----------FRILTNMHQQSERMRRIVEDLLLLSRLETS 296

CP001801_1550: domain 1 of 1, from 681 to 747: score 66.6, E = 8.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ +a++sHELRTPL+ I+gya++ + +++ + qr
CP001801_1 681 AKSRYMAGISHELRTPLNCILGYAQIVEH---------DPAVPRQR- 717

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++i+r++e+l +Lin lLd+++ieag
CP001801_1 718 ----------REEMKVIRRSGEHLISLINGLLDMAKIEAG 747

CP001801_2218: domain 1 of 1, from 325 to 390: score 60.4, E = 5.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+++HE R+PL++Ir ++elL + ++ ee
CP001801_2 325 SLGRLTASIAHEVRNPLSSIRQASELLAD---------STSQEER-- 360

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ +i+r + r++ L++ +Ld +r +
CP001801_2 361 ----------AELIPIIIRHSARINTLVEGVLDVARRPQV 390

CP001801_0254: domain 1 of 1, from 136 to 193: score 58.7, E = 1.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++++l+HEL++PL +++g+a+lL++ el+ ++
CP001801_0 136 STRQLVRGLAHELKNPLGGLQGAAQLLER----------ELPNADL- 171

peLRledpeyreyletilreaerllrLindlL<-*
re++++il+e+ rl +Li+++L
CP001801_0 172 ----------REFTQIILNESSRLKNLIDRML 193

CP001801_2053: domain 1 of 1, from 266 to 331: score 54.0, E = 3.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a+++HEL TPL++I g a+ + + + +++
CP001801_2 266 AIGRLAAGVAHELGTPLSVIDGRAQRAMR---------SVADASL-- 301

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l i+re+er +++i++l+d+sr
CP001801_2 302 ----------ASALGDIRREVERVSSIIRQLMDFSRNNPL 331

CP001801_2033: domain 1 of 1, from 510 to 582: score 49.2, E = 7.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a se ++ l+HE+++PLt I++ ae L+++l ++ls+e ++
CP001801_2 510 AWSEVARRLAHEIKNPLTPIQLSAERLRRRL------LGNLSDEPAQ 550

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ti++++e + ++n++ +++r +
CP001801_2 551 IL--------DRSTQTIINQVEAMKFMVNEFAEYARSPQI 582

CP001801_2021: domain 1 of 1, from 428 to 495: score 46.9, E = 3.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +e++a++ HE+++PL+ I++++ lL++ l++e++
CP001801_2 428 SIGEMAAGIGHEINNPLNNILTLTRLLER----------QLPPEKT- 463

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e r le ++ ea r ++++ ++ ++r +
CP001801_2 464 --------ELRTDLEDLRAEALRVGHIVRGVMNFARQLPP 495

CP001801_0767: domain 1 of 1, from 258 to 324: score 42.2, E = 7.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + n++H+LR PLt +r +e+ l+ +e+++e+
CP001801_0 258 GMRSVTDNIAHDLRSPLTRLRNRLEISLT---------HERPAEE-- 293

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr + l++a++ll+L n l ++++eag
CP001801_0 294 ---------YRNVMQQTLDDADQLLALFNTLIAIAQAEAG 324

CP001801_0205: domain 1 of 1, from 239 to 300: score 41.8, E = 9.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+LRTPLt +++ + l ++ + ++ q
CP001801_0 239 NRTVLLAGISHDLRTPLTRLSLGLALTQD---------DIEPALQ-- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++e+++rLi ++L ++r ++
CP001801_0 275 --------------AQMQADIEQMNRLIAEVLHIARGVSQ 300

CP001801_1949: domain 1 of 1, from 254 to 319: score 39.6, E = 4.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l+HEL+ P++aIrg++elL + ++ se +
CP001801_1 254 HVEKVSQLLAHELKSPIAAIRGAIELLPD---------ETDSERRI- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i e+ rl+r+++ +L l+r+e+
CP001801_1 291 -----------RLETNIATETTRLQRIVDGVLNLARAENR 319


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 7 0|=
-13 43 1|*=====
-12 89 53|======*=====
-11 209 279|=========================== *
-10 383 518|================================================ *
-9 471 535|==========================================================*
-8 405 400|=================================================*=
-7 280 252|===============================*===
-6 182 145|==================*====
-5 106 79|=========*====
-4 86 42|=====*=====
-3 30 22|==*=
-2 26 11|=*==
-1 9 6|*=
0 6 3|*
1 6 1|*
2 1 0|=
3 1 0|=
4 1 0|=
5 0 0|
6 0 0|
> 7 16 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 169.3530
P(chi-square) = 1.603e-30

Total sequences searched: 2357

Whole sequence top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: