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Classification of phyla is from NCBI page
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2 accessions found for Gordonia bronchialis DSM 43247  

Data for CP001802  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001802.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001802_0775 CDS_880072-881538 77.2 1.8e-21 1
CP001802_3463 CDS_3867535-3865862 75.3 5.9e-21 1
CP001802_4044 CDS_4564183-4562657 68.9 3.8e-19 1
CP001802_3893 CDS_4393144-4390607 66.5 1.9e-18 1
CP001802_0946 CDS_1060339-1061790 65.7 3.1e-18 1
CP001802_1319 CDS_1467621-1469117 56.7 1.2e-15 1
CP001802_1251 CDS_1388129-1386612 52.7 1.6e-14 1
CP001802_4019 CDS_4530522-4529290 44.2 4e-12 1
CP001802_2476 CDS_2785464-2786696 42.0 1.6e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001802_0775 1/1 263 327 .. 1 87 [] 77.2 1.8e-21
CP001802_3463 1/1 296 363 .. 1 87 [] 75.3 5.9e-21
CP001802_4044 1/1 261 324 .. 1 87 [] 68.9 3.8e-19
CP001802_3893 1/1 617 685 .. 1 87 [] 66.5 1.9e-18
CP001802_0946 1/1 208 274 .. 1 87 [] 65.7 3.1e-18
CP001802_1319 1/1 263 335 .. 1 87 [] 56.7 1.2e-15
CP001802_1251 1/1 270 335 .. 1 87 [] 52.7 1.6e-14
CP001802_4019 1/1 150 214 .. 1 87 [] 44.2 4e-12
CP001802_2476 1/1 150 214 .. 1 87 [] 42.0 1.6e-11

Alignments of top-scoring domains:
CP001802_0775: domain 1 of 1, from 263 to 327: score 77.2, E = 1.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sHELRTPLt+I+g+ael + + ++ +
CP001802_0 263 KMRRFIADASHELRTPLTSIKGFAELYRQ---------GGVPDAT-- 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++i++ea r+ L++dlL l+r++a+
CP001802_0 299 -----------DAMRRIDDEAGRMTLLVEDLLVLARLDAQ 327

CP001802_3463: domain 1 of 1, from 296 to 363: score 75.3, E = 5.9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt++r+++++L e g++el++
CP001802_3 296 LQRQFTSDVSHELRTPLTTVRMASDVLYE-------GRDELDPVR-- 333

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e +++e++r + L+n+lL++sr +ag
CP001802_3 334 ----------KRSVELLDKELDRFETLLNELLEISRHDAG 363

CP001802_4044: domain 1 of 1, from 261 to 324: score 68.9, E = 3.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ ++ HELRTP+t++rg++elL + ++e+r
CP001802_4 261 TQRQFVDDAGHELRTPITVVRGHLELLPD------------DPEER- 294

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l +++e+ r+ r+++dlL l+++e++
CP001802_4 295 ----------AKTLALVDSELVRMGRIVSDLLMLAKAEQP 324

CP001802_3893: domain 1 of 1, from 617 to 685: score 66.5, E = 1.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sH+LRTPL+a +++++ L+ d + s+e++
CP001802_3 617 LRRALLSAVSHDLRTPLAAAKAAVSSLRS-------TDVTFSPEDT- 655

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l ti++++++l++L+ +lLd sr+ ag
CP001802_3 656 ----------EELLATIEESTDQLSALVGNLLDSSRLAAG 685

CP001802_0946: domain 1 of 1, from 208 to 274: score 65.7, E = 3.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ aI ++ae++le ++ +++ +
CP001802_0 208 TRRDFVANVSHELKTPVGAIGLLAEAMLE---------SADDADSV- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++ e+ r+ +++++l lsr++ g
CP001802_0 245 ----------QHFGRRVVAESARMGNMVSELIALSRLQGG 274

CP001802_1319: domain 1 of 1, from 263 to 335: score 56.7, E = 1.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +++a++ HELRTPLt++r+++elL + a+++ +++ +
CP001802_1 263 RQARLVADAGHELRTPLTSLRTNLELLIA------ASEPGAPAVPTE 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e+ + + ++e l+ L+ dl dl+r +a+
CP001802_1 304 DM--------VELRSDVMAQIEELSTLVGDLVDLAREDAP 335

CP001802_1251: domain 1 of 1, from 270 to 335: score 52.7, E = 1.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+ ++sHELR PLt+I g+++l+ t+ + ++
CP001802_1 270 SHLRFVGDASHELRSPLTTIVGLLDLADC---------TATPVDT-- 305

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++l ea+r++++++dlL l+r++++
CP001802_1 306 ----------ETVRTILLPEARRMQHMVEDLLLLARADEN 335

CP001802_4019: domain 1 of 1, from 150 to 214: score 44.2, E = 4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++l++l+HELRTPLt+I + ++++++ + + ++
CP001802_4 150 IRKRMLSDLAHELRTPLTTIGAITDAIED---------GIRAPDS-- 185

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++ ++ rl+rL +d+ + s +++
CP001802_4 186 -----------QTFDVVRTATTRLQRLAEDIATVSSADEH 214

CP001802_2476: domain 1 of 1, from 150 to 214: score 42.0, E = 1.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++l++l+HELRTPLt+I + ++++++ + + ++
CP001802_2 150 IRKRMLSDLAHELRTPLTTIGAITDAIED---------GIRAPDS-- 185

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ ++ rl+rL +d+ + s +++
CP001802_2 186 -----------HTFDVVRTATTRLQRLAEDIATVSSADEH 214


Histogram of all scores:
score obs exp (one = represents 16 sequences)
----- --- ---
-15 3 0|=
-14 16 0|=
-13 55 3|*===
-12 199 105|======*======
-11 484 547|=============================== *
-10 773 1015|================================================= *
-9 930 1048|==========================================================*
-8 795 784|================================================*=
-7 580 494|==============================*======
-6 344 284|=================*====
-5 206 156|=========*===
-4 99 83|=====*=
-3 62 44|==*=
-2 27 23|=*
-1 15 12|*
0 7 6|*
1 5 3|*
2 1 1|*
3 3 0|=
4 1 0|=
5 0 0|
> 6 11 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 215.8545
P(chi-square) = 3.249e-309

Total sequences searched: 4616

Whole sequence top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: