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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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106 projects found  

2 accessions found for Gordonia bronchialis DSM 43247  

Data for CP001802  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001802.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001802_3354 CDS_3747529-3746027 116.1 8.6e-33 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001802_3354 1/1 304 384 .. 1 94 [] 116.1 8.6e-33

Alignments of top-scoring domains:
CP001802_3354: domain 1 of 1, from 304 to 384: score 116.1, E = 8.6e-33
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ +S+LLrLQar++ +e++ + aL E+++RV+S
CP001802_3 304 EIHHRVKNNLQSVSALLRLQARRTANEDA-----RVALTEAVRRVAS 345

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+Al+HE L+ s d + vd++e +++L+ L + ++++ +
CP001802_3 346 IALVHELLSGSVD-EEVDLDEAVDRLVPILVDVASGDQT-------I 384


Histogram of all scores:
score obs exp (one = represents 23 sequences)
----- --- ---
-15 14 0|=
-14 24 0|==
-13 81 28|=*==
-12 293 303|=============*
-11 1353 844|====================================*======================
-10 1061 1092|===============================================*
-9 697 922|=============================== *
-8 496 619|====================== *
-7 229 367|========== *
-6 203 204|========*
-5 69 110|=== *
-4 31 58|==*
-3 36 30|=*
-2 9 16|*
-1 13 8|*
0 2 4|*
1 1 2|*
> 2 4 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 568.6920
P(chi-square) = 0

Total sequences searched: 4616

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: