Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
35 projects found  

1 accessions found for Haliangium ochraceum DSM 14365  

Data for CP001804  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001804.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001804_1753 CDS_2545887-2544358 39.5 3.9e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001804_1753 1/1 295 360 .. 1 70 [] 39.5 3.9e-11

Alignments of top-scoring domains:
CP001804_1753: domain 1 of 1, from 295 to 360: score 39.5, E = 3.9e-11
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER++++RELHDs+gQ L + +l +e+++ +l +p++ r+a + +
CP001804_1 295 ERQHLSRELHDSIGQLLLVHRLEAEWLANQL----EPGPERDATEHL 337

relarealaevRrllgdLRpaal<-*
+ ++e+l vR l+ dLRp+a
CP001804_1 338 CTGLDETLHLVRTLAMDLRPPAI 360


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-14 6 0|=
-13 28 0|==
-12 96 75|====*=
-11 146 615|========= *
-10 517 1428|=============================== *
-9 894 1622|===================================================== *
-8 854 1250|=================================================== *
-7 877 786|==============================================*=====
-6 801 444|==========================*=====================
-5 957 238|=============*===========================================
-4 499 124|=======*======================
-3 316 64|===*===============
-2 263 32|=*==============
-1 155 16|*=========
0 122 8|*=======
1 67 4|*===
2 32 2|*=
3 36 1|*==
4 21 0|==
5 11 0|=
6 6 0|=
7 3 0|=
8 2 0|=
9 4 0|=
10 2 0|=
11 1 0|=
12 1 0|=
13 0 0|
> 14 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 10260.4512
P(chi-square) = 0

Total sequences searched: 6719

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: