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Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Vibrio sp. Ex25  

Data for CP001805  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001805.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001805_2025 CDS_2242862-2246029 99.9 4.2e-28 1
CP001805_0892 CDS_984676-981878 94.3 1.6e-26 1
CP001805_2292 CDS_2542336-2539916 92.4 5.6e-26 1
CP001805_1852 CDS_2047872-2046151 86.4 2.8e-24 1
CP001805_1547 CDS_1732517-1734217 84.4 1e-23 1
CP001805_2770 CDS_3083147-3081939 77.3 1e-21 1
CP001805_0977 CDS_1092000-1088665 77.2 1.1e-21 1
CP001805_2849 CDS_3174752-3172398 71.3 5.2e-20 1
CP001805_1449 CDS_1617538-1616249 63.8 6.8e-18 1
CP001805_0031 CDS_35265-33880 62.8 1.3e-17 1
CP001805_2006 CDS_2220886-2222313 59.3 1.3e-16 1
CP001805_0298 CDS_298002-299048 58.7 1.9e-16 1
CP001805_0594 CDS_647232-650399 57.5 4.2e-16 1
CP001805_0609 CDS_667013-665619 55.4 1.7e-15 1
CP001805_1202 CDS_1340370-1341401 53.7 5.2e-15 1
CP001805_0260 CDS_261144-259852 50.0 5.7e-14 2
CP001805_2434 CDS_2704227-2706032 47.2 3.4e-13 1
CP001805_1425 CDS_1589364-1591187 41.5 1.5e-11 1
CP001805_1890 CDS_2089999-2088020 41.4 1.6e-11 1
CP001805_1465 CDS_1640805-1638265 27.1 1.7e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001805_2025 1/1 398 463 .. 1 87 [] 99.9 4.2e-28
CP001805_0892 1/1 290 355 .. 1 87 [] 94.3 1.6e-26
CP001805_2292 1/1 352 417 .. 1 87 [] 92.4 5.6e-26
CP001805_1852 1/1 214 279 .. 1 87 [] 86.4 2.8e-24
CP001805_1547 1/1 204 269 .. 1 87 [] 84.4 1e-23
CP001805_2770 1/1 175 242 .. 1 87 [] 77.3 1e-21
CP001805_0977 1/1 442 510 .. 1 87 [] 77.2 1.1e-21
CP001805_2849 1/1 282 347 .. 1 87 [] 71.3 5.2e-20
CP001805_1449 1/1 224 289 .. 1 87 [] 63.8 6.8e-18
CP001805_0031 1/1 230 296 .. 1 87 [] 62.8 1.3e-17
CP001805_2006 1/1 259 324 .. 1 87 [] 59.3 1.3e-16
CP001805_0298 1/1 129 194 .. 1 87 [] 58.7 1.9e-16
CP001805_0594 1/1 700 765 .. 1 87 [] 57.5 4.2e-16
CP001805_0609 1/1 248 310 .. 1 87 [] 55.4 1.7e-15
CP001805_1202 1/1 122 188 .. 1 87 [] 53.7 5.2e-15
CP001805_2434 1/1 372 440 .. 1 87 [] 47.2 3.4e-13
CP001805_0260 2/2 222 282 .. 1 87 [] 46.6 5.2e-13
CP001805_1425 1/1 383 452 .. 1 87 [] 41.5 1.5e-11
CP001805_1890 1/1 428 495 .. 1 87 [] 41.4 1.6e-11
CP001805_1465 1/1 461 530 .. 1 87 [] 27.1 1.7e-07

Alignments of top-scoring domains:
CP001805_2025: domain 1 of 1, from 398 to 463: score 99.9, E = 4.2e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++++g +e+L + t+l++ q
CP001805_2 398 AKSSFLANMSHEIRTPLNGVIGISEVLSD---------TPLTATQ-- 433

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ti+ +++ ll+Lind+Ld+s+ie+g
CP001805_2 434 ----------RDYVDTIETSSQLLLSLINDVLDFSKIESG 463

CP001805_0892: domain 1 of 1, from 290 to 355: score 94.3, E = 1.6e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ +l+ t ls q
CP001805_0 290 VKSEFLANMSHELRTPLNGVIGFTRQMLK---------TQLSNSQ-- 325

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+++a+ ll++ind+Ld+s++eag
CP001805_0 326 ----------TDYLQTIEKSANNLLNIINDILDFSKLEAG 355

CP001805_2292: domain 1 of 1, from 352 to 417: score 92.4, E = 5.6e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fla+lsHE+RTP+++++g+a++Ll+ t+l+++q
CP001805_2 352 AKTAFLATLSHEIRTPMNGVLGTAQILLK---------TPLTDDQ-- 387

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+t++++++++ L+n++Ld+s+ie+g
CP001805_2 388 ----------RKHLRTLYDSGDHMMTLLNEILDYSKIEQG 417

CP001805_1852: domain 1 of 1, from 214 to 279: score 86.4, E = 2.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ksefla++sHE+RTPL++++g++++L+ ++lseeq+
CP001805_1 214 SKSEFLAMMSHEIRTPLNSVLGMLDILKQ---------STLSEEQI- 250

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+ ++ +ae ll++i+d+Ldls+ie+g
CP001805_1 251 -----------DALSQMECSAELLLAIISDILDLSKIESG 279

CP001805_1547: domain 1 of 1, from 204 to 269: score 84.4, E = 1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ef+a++ HELRTPL++++g aelL + t l+eeq
CP001805_1 204 ATKEFVAMINHELRTPLNGVLGSAELLSR---------TQLGEEQ-- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl+ + ++++ l+ +indlLd+s++ ag
CP001805_1 240 ----------RHYLNNLTQSGDLLRVIINDLLDFSKMNAG 269

CP001805_2770: domain 1 of 1, from 175 to 242: score 77.3, E = 1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+an+sHELRTP+t+++gy+e+ ++ +++
CP001805_2 175 MRRNFFANVSHELRTPMTVLQGYLEMTED---------PDMVVGP-- 210

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ ++ ++++r+++L+n+lL+ls+iea
CP001805_2 211 --------MWSKAHGVMTEQLNRMNSLVNQLLTLSKIEAA 242

CP001805_0977: domain 1 of 1, from 442 to 510: score 77.2, E = 1.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+ sHELRTPL+++ g ae+L +++ ++ ++ q
CP001805_0 442 LKDEFLATTSHELRTPLHGMVGIAETLASGAN------GAIPASQ-- 480

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i+++++rl +L++dlLd+ +++ g
CP001805_0 481 ----------KYQLDIIIKSGQRLANLVDDLLDYHKMRYG 510

CP001805_2849: domain 1 of 1, from 282 to 347: score 71.3, E = 5.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ ++l+eeq
CP001805_2 282 DKTTFISTISHELRTPLNGIVGLSRMLLD---------SPLTEEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +ti +a l ++ nd+ d+ + +
CP001805_2 318 ----------RKHMQTINVSAITLGNIFNDIIDMDKFDRR 347

CP001805_1449: domain 1 of 1, from 224 to 289: score 63.8, E = 6.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f++++sHELRTPLt+++g ++lL + ++ ++ q
CP001805_1 224 REQAFARYASHELRTPLTVMKGSSSLLAR---------SPSTPFQ-- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + +i++++++++ +++ lL l r e +
CP001805_1 260 ----------ERQIGRIQDATQQMSTMVDALLGLVRYERN 289

CP001805_0031: domain 1 of 1, from 230 to 296: score 62.8, E = 1.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++sef ++++HEL+TPLt I + +++l + +++e+
CP001805_0 230 RLSEFSSDIAHELKTPLTNITTQNQVILG---------ACRTPEE-- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++++ + l+e++r+ + indlL ++++e+
CP001805_0 266 ---------YQDAIASTLEELNRITKTINDLLYIAKAENK 296

CP001805_2006: domain 1 of 1, from 259 to 324: score 59.3, E = 1.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+++++HEL+TPLt +r+++e +le ++eq+
CP001805_2 259 REKRFTRAAAHELKTPLTILRLNVENALE----------SNDPEQL- 294

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ il+ +er +rLi +lL+l++ ++
CP001805_2 295 ----------RGDLHNILQGIERTDRLIHQLLTLAKVDSL 324

CP001805_0298: domain 1 of 1, from 129 to 194: score 58.7, E = 1.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++l+HE+++PL ++rg+a+lL++ l+++ +
CP001805_0 129 AAKLLVRGLAHEIKNPLGGLRGAAQLLEK----------MLPDPSL- 164

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+++i+++a+rl++L+++lL + +
CP001805_0 165 ----------TEYTHIIIEQADRLRALVDRLLGPQKPGKK 194

CP001805_0594: domain 1 of 1, from 700 to 765: score 57.5, E = 4.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sH+L +PL+a r++a+ L e ++++e
CP001805_0 700 SKSRFLAAVSHDLMQPLNAARLFASSLSE---------VAKDSEA-- 735

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i++++e ++Li dlLd+sr+e+g
CP001805_0 736 ----------KKLSAHIESALEAAEDLIGDLLDISRLESG 765

CP001805_0609: domain 1 of 1, from 248 to 310: score 55.4, E = 1.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+++sHELR PLt +r+++ l+ + +++
CP001805_0 248 GQQRLLSDISHELRSPLTRLRMASALATR---------KQGESPE-- 283

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +i+ ea+rl+++i++lL+lsr++a+
CP001805_0 284 -------------LTRIDTEAQRLEQMISELLELSRMQAN 310

CP001805_1202: domain 1 of 1, from 122 to 188: score 53.7, E = 5.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l+H+ RTPL++ ++ya+ L + ++l++ +r
CP001805_1 122 SLGRMVASLAHQVRTPLSSAMLYASNLGA---------PNLPPATR- 158

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ + ++ l++++nd+L +++ + +
CP001805_1 159 ----------DRFQTKLMDRLHDLEKQVNDMLLFAKGGDN 188

CP001805_2434: domain 1 of 1, from 372 to 440: score 47.2, E = 3.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ a++sHEL++PL+aIr +ae + +l ++ e +
CP001805_2 372 VLGQMSASISHELNNPLAAIRSFAENGKLFL-------QKEKYERV- 410

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l +i ++r+ ++ ++l+ +++ +g
CP001805_2 411 ----------EDNLTRISALTDRMANISQQLRSFAKKTSG 440

CP001805_0260: domain 2 of 2, from 222 to 282: score 46.6, E = 5.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a++sH+LRTPLt Ir+++e++ e+
CP001805_0 222 DRALLMAGISHDLRTPLTRIRLATEMMSP--------------ED-- 252

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e i++++e ++++i++++d+ + +
CP001805_0 253 ----------SYLAEGIISDTEECNEIISQFMDYLKPVNK 282

CP001805_1425: domain 1 of 1, from 383 to 452: score 41.5, E = 1.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e ++l+HEL++PL+aIr y+e l +l +++ e++
CP001805_1 383 IVGEIGSSLAHELNQPLAAIRNYSEGGLLRLA------KKRPHEDI- 422

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ++er +++i++l++l r ++
CP001805_1 423 ----------VPVLEKIQGQVERADAIIQRLRTLIRKRSV 452

CP001805_1890: domain 1 of 1, from 428 to 495: score 41.4, E = 1.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+++P ++I+g++el+ el ++ +
CP001805_1 428 ALGELTAGIAHEINNPTAVILGNVELIHFEL-------GDDASRV-- 465

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ i+ +++r++++ + lL++sr +
CP001805_1 466 ----------QEEVDAIHAQIDRIRNITRSLLQYSRQGGV 495

CP001805_1465: domain 1 of 1, from 461 to 530: score 27.1, E = 1.7e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++ +++HE+R+PL+ +++ e+L+ ++++++s e++
CP001805_1 461 QSRALANSIAHEMRNPLAQVQLRFEALKQ------HIESNASLETL- 500

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ + +++r ++Li+ +L ++
CP001805_1 501 ----------KSEIDKGEAAIQRGRQLIDIILREVSDSSP 530


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-15 5 0|=
-14 19 0|==
-13 50 2|*====
-12 146 66|======*========
-11 309 345|=============================== *
-10 474 641|================================================ *
-9 534 661|====================================================== *
-8 481 495|=================================================*
-7 370 312|===============================*=====
-6 195 179|=================*==
-5 128 98|=========*===
-4 84 52|=====*===
-3 35 27|==*=
-2 23 14|=*=
-1 17 7|*=
0 11 3|*=
1 4 2|*
2 5 1|*
3 0 0|
4 0 0|
5 1 0|=
6 0 0|
> 7 24 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 224.3528
P(chi-square) = 1.21e-311

Total sequences searched: 2915

Whole sequence top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: