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Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

2 accessions found for Vibrio sp. Ex25  

Data for CP001805  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001805.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001805_1523 CDS_1706877-1708232 63.7 1.3e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001805_1523 1/1 250 315 .. 1 70 [] 63.7 1.3e-18

Alignments of top-scoring domains:
CP001805_1523: domain 1 of 1, from 250 to 315: score 63.7, E = 1.3e-18
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
E +++ARELHD++ Q L + k +l+l ++l +++ +++ +ld
CP001805_1 250 EKKHLARELHDGINQLLVSSKCHLDLMSHRL--EDE--KLKSHLDKS 292

relarealaevRrllgdLRpaal<-*
++ + +a++evR++ ++LRp+al
CP001805_1 293 QRSLVTAINEVRHISHQLRPSAL 315


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 1 0|=
-14 49 0|=====
-13 96 0|=========
-12 133 32|==*==========
-11 196 267|================== *
-10 513 619|=============================================== *
-9 595 703|======================================================= *
-8 437 542|======================================== *
-7 328 341|==============================*
-6 209 193|=================*=
-5 165 103|=========*=====
-4 79 54|====*===
-3 53 27|==*==
-2 22 14|=*
-1 17 7|*=
0 9 3|*
1 7 1|*
2 0 0|
3 2 0|=
4 0 0|
5 1 0|=
6 1 0|=
> 7 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 474.7579
P(chi-square) = 0

Total sequences searched: 2915

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: