Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

2 accessions found for Vibrio sp. Ex25  

Data for CP001806  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001806.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001806_0982 CDS_1115733-1113838 98.0 7.8e-28 1
CP001806_0543 CDS_645401-642915 96.6 1.9e-27 1
CP001806_0318 CDS_345805-342842 90.5 1e-25 2
CP001806_0535 CDS_638083-635507 86.5 1.5e-24 1
CP001806_0355 CDS_400538-398181 84.5 5.2e-24 2
CP001806_0383 CDS_436521-433900 79.4 1.5e-22 1
CP001806_1282 CDS_1464043-1465077 64.4 2.6e-18 1
CP001806_0849 CDS_977105-975732 57.4 2.5e-16 1
CP001806_0579 CDS_677242-678537 55.6 8.3e-16 1
CP001806_1202 CDS_1365959-1367332 42.0 5.8e-12 1
CP001806_1588 CDS_1808277-1809518 38.3 6.6e-11 1
CP001806_0555 CDS_655426-654104 30.1 1.4e-08 1
CP001806_0129 CDS_143571-145025 29.0 2.8e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001806_0982 1/1 243 308 .. 1 87 [] 98.0 7.8e-28
CP001806_0543 1/1 328 393 .. 1 87 [] 96.6 1.9e-27
CP001806_0318 2/2 469 534 .. 1 87 [] 89.6 1.9e-25
CP001806_0535 1/1 481 546 .. 1 87 [] 86.5 1.5e-24
CP001806_0355 2/2 269 334 .. 1 87 [] 82.4 2.1e-23
CP001806_0383 1/1 374 439 .. 1 87 [] 79.4 1.5e-22
CP001806_1282 1/1 119 187 .. 1 87 [] 64.4 2.6e-18
CP001806_0849 1/1 234 298 .. 1 87 [] 57.4 2.5e-16
CP001806_0579 1/1 211 276 .. 1 87 [] 55.6 8.3e-16
CP001806_1202 1/1 257 320 .. 1 87 [] 42.0 5.8e-12
CP001806_1588 1/1 220 286 .. 1 87 [] 38.3 6.6e-11
CP001806_0555 1/1 222 286 .. 1 87 [] 30.1 1.4e-08
CP001806_0129 1/1 276 343 .. 1 87 [] 29.0 2.8e-08

Alignments of top-scoring domains:
CP001806_0982: domain 1 of 1, from 243 to 308: score 98.0, E = 7.8e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksefla++sHE+RTP+++I+g a+lL + t+l+++q
CP001806_0 243 KKSEFLATMSHEIRTPMNGIIGVASLLGD---------TKLDPQQ-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++e+i++++++l +i+d+Ld+s+ eag
CP001806_0 279 ----------KEFVEIIDSSSHSLMTIIDDILDFSKVEAG 308

CP001806_0543: domain 1 of 1, from 328 to 393: score 96.6, E = 1.9e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++I+g++e+L +els+ q
CP001806_0 328 AKSVFLANMSHEIRTPLNGIMGMTEILSQ---------SELSSHQ-- 363

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ i+++++ ll L+nd+Ldls+ie+g
CP001806_0 364 ----------QEVVDDIDSSSQTLLTLLNDILDLSKIESG 393

CP001806_0318: domain 2 of 2, from 469 to 534: score 89.6, E = 1.9e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++++g+a lL + + l++ q
CP001806_0 469 AKSAFLATMSHEIRTPMNGVLGTARLLID---------SGLNPIQ-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y e+i r+++ ll+++nd+Ld+s+ieag
CP001806_0 505 ----------KRYAEIINRSGKTLLAILNDVLDYSKIEAG 534

CP001806_0535: domain 1 of 1, from 481 to 546: score 86.5, E = 1.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +fla +sHE+RTP+++I+g a+lL++ + +eeq
CP001806_0 481 ARADFLAKMSHEIRTPINGILGVAQLLKD---------SVETEEQ-- 516

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++++e+ll+ +nd+Ld+s+ie+g
CP001806_0 517 ----------NNQIDVLRHSGEHLLAVLNDILDFSKIEQG 546

CP001806_0355: domain 2 of 2, from 269 to 334: score 82.4, E = 2.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHELRTP+++++g+++++ e e +e+++
CP001806_0 269 AKSSFLAAMSHELRTPMNGVLGLSQMIAE----------ETNEPTT- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey+++il+++++l ++nd+Ld+s+ e++
CP001806_0 305 ----------KEYVKVILDSGQHLMTILNDILDFSKVEEN 334

CP001806_0383: domain 1 of 1, from 374 to 439: score 79.4, E = 1.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP++aI+g +e+Lle e e
CP001806_0 374 AKSEFLANMSHEIRTPMNAIMGISEILLE---------NENRREP-- 409

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l ++++a+ l +ind+Ld+s+ eag
CP001806_0 410 ----------RELLLLLHKSANNLVTIINDILDYSKVEAG 439

CP001806_1282: domain 1 of 1, from 119 to 187: score 64.4, E = 2.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l ++sH+LRTPL++I+g++ +L e++ ++l++ +r
CP001806_1 119 LQNSILLSVSHDLRTPLATIIGTLTTLNEYM-------PKLNDLER- 157

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+++ +e++rl + i++lL+ +++++g
CP001806_1 158 ----------KELLDSATSESHRLHQYIENLLQATKLQHG 187

CP001806_0849: domain 1 of 1, from 234 to 298: score 57.4, E = 2.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +++++sHELRTPL+ + ++lL++ +e +
CP001806_0 234 KQRLLIRDVSHELRTPLARQNLVLHLLRK----------RVGENE-- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++++ea+ l++Li+d+L++sr+e+
CP001806_0 269 ----------QSLVTRLEDEAKELNHLISDILEFSRLENA 298

CP001806_0579: domain 1 of 1, from 211 to 276: score 55.6, E = 8.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +++HELRTP+ ++ a+lL + ++l+e+q
CP001806_0 211 SNKMLTNAVAHELRTPIFRLQWQADLLSD---------STLTEQQ-- 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++i ++++ +++++++lL ++++e +
CP001806_0 247 ----------KKHVRSIVEDIDEMEDMVEELLYYAKMERP 276

CP001806_1202: domain 1 of 1, from 257 to 320: score 42.0, E = 5.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l lsH+L+TPL++++gy+e+ + + +e
CP001806_1 257 HRRQSLLQLSHDLKTPLSSVLGYLETWRL-----------QHPES-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ r e l+ ++ lLd +r e++
CP001806_1 291 ----------DPLIDVAFRNCEKLSTQLHSLLDVARKEEP 320

CP001806_1588: domain 1 of 1, from 220 to 286: score 38.3, E = 6.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef + +sHELRTP+ +I+g +++L + + + +
CP001806_1 220 REQEFSRFASHELRTPIMVIKGSTDILTR---------IPEQPRVA- 256

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +++++ e ++ L + +L l + +
CP001806_1 257 ----------QKAIARMQSACEDMRVLTEAFLLLGKEKIE 286

CP001806_0555: domain 1 of 1, from 222 to 286: score 30.1, E = 1.4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+ ++ HE RTPL+ I+++++l+++ + +e q
CP001806_0 222 QTHIFTQAIPHEVRTPLSRIQLATDLARR----------TSGEMQ-- 256

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ + i+r ++ +L +d+ lsr+
CP001806_0 257 ----------AELHDDIERYVDVVTDLTSDIVMLSRLSVK 286

CP001806_0129: domain 1 of 1, from 276 to 343: score 29.0, E = 2.8e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l l HELRTP++++++++e ++e+ ++l+e
CP001806_0 276 SRMLVLQILTHELRTPIASLSLTVEGFRREF-------EHLPESV-- 313

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++ ++++rl++L + d+ + +++
CP001806_0 314 ----------YDEFRRLCEDTRRLRQLAEASKDYLQSDNQ 343


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 3 0|=
-14 6 0|=
-13 23 1|*===
-12 84 36|=====*========
-11 149 190|========================= *
-10 262 352|============================================ *
-9 301 364|=================================================== *
-8 251 272|========================================== *
-7 215 171|============================*=======
-6 106 98|================*=
-5 78 54|========*====
-4 46 29|====*===
-3 26 15|==*==
-2 11 8|=*
-1 9 4|*=
0 8 2|*=
1 4 1|*
2 2 0|=
3 0 0|
4 1 0|=
> 5 18 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 146.2006
P(chi-square) = 2.252e-26

Total sequences searched: 1603

Whole sequence top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: