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Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Vibrio sp. Ex25  

Data for CP001806  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001806.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001806_0509 CDS_613084-611348 72.2 2.1e-21 1
CP001806_0091 CDS_103536-102034 52.8 1.1e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001806_0509 1/1 369 441 .. 1 70 [] 72.2 2.1e-21
CP001806_0091 1/1 303 368 .. 1 70 [] 52.8 1.1e-15

Alignments of top-scoring domains:
CP001806_0509: domain 1 of 1, from 369 to 441: score 72.2, E = 2.1e-21
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.....eare
ERa IARELHDs++Q+Ls +k+q+ l++r + + p+++ +a +
CP001806_0 369 ERATIARELHDSLAQALSYLKIQVALLKRSV--KNLPDekaiaQANQ 413

aldeirelarealaevRrllgdLRpaal<-*
++e+ + ++ a++++R+ll+++R ++
CP001806_0 414 VIAELDTGLSAAYTQLRELLTTFRLTIK 441

CP001806_0091: domain 1 of 1, from 303 to 368: score 52.8, E = 1.1e-15
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R+ IARELHD++gQ+++ai+ q+ ++r ++e +d+i
CP001806_0 303 VRRDIARELHDEIGQNITAIRTQANIIKR----VNNAETSVGCADMI 345

relarealaevRrllgdLRpaal<-*
++l+ ++ + rll+ LRp l
CP001806_0 346 EGLSLNVYDTTKRLLSKLRPKML 368


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 22 0|====
-13 64 0|==========
-12 85 17|==*==========
-11 119 146|================= *
-10 290 340|========================================== *
-9 365 387|===================================================== *
-8 202 298|============================= *
-7 169 187|========================= *
-6 116 106|===============*=
-5 79 56|=======*====
-4 36 29|====*=
-3 19 15|==*
-2 13 7|*=
-1 11 3|*=
0 5 2|*
1 3 1|*
> 2 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 313.6742
P(chi-square) = 0

Total sequences searched: 1603

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: