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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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41 projects found  

2 accessions found for Rhodothermus marinus DSM 4252  

Data for CP001807  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001807.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001807_1680 CDS_1967987-1972027 102.4 7.5e-29 1
CP001807_0997 CDS_1161733-1164822 97.1 2.5e-27 1
CP001807_2720 CDS_3198669-3201026 92.6 4.6e-26 1
CP001807_0182 CDS_198978-201053 86.6 2.3e-24 1
CP001807_1480 CDS_1756773-1754014 86.4 2.6e-24 1
CP001807_2633 CDS_3098007-3096949 79.7 2.1e-22 1
CP001807_2284 CDS_2683565-2682102 76.8 1.4e-21 1
CP001807_1826 CDS_2164655-2161431 76.7 1.4e-21 1
CP001807_0977 CDS_1130035-1128647 72.2 2.7e-20 1
CP001807_2618 CDS_3079332-3078031 70.8 6.7e-20 1
CP001807_2403 CDS_2827157-2825169 68.5 3.1e-19 1
CP001807_0505 CDS_577614-576145 68.3 3.5e-19 1
CP001807_2379 CDS_2798327-2796441 68.3 3.6e-19 1
CP001807_2719 CDS_3196094-3198667 66.3 1.3e-18 1
CP001807_0973 CDS_1122803-1124263 55.1 2e-15 1
CP001807_1171 CDS_1394248-1392308 52.1 1.4e-14 1
CP001807_1353 CDS_1606804-1605368 50.3 4.3e-14 1
CP001807_2377 CDS_2795986-2794043 48.7 1.3e-13 1
CP001807_0722 CDS_847738-851781 41.1 1.8e-11 1
CP001807_1428 CDS_1692872-1691532 40.1 3.5e-11 1
CP001807_0785 CDS_915395-916117 27.0 1.8e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001807_1680 1/1 815 880 .. 1 87 [] 102.4 7.5e-29
CP001807_0997 1/1 799 867 .. 1 87 [] 97.1 2.5e-27
CP001807_2720 1/1 553 621 .. 1 87 [] 92.6 4.6e-26
CP001807_0182 1/1 450 514 .. 1 87 [] 86.6 2.3e-24
CP001807_1480 1/1 676 743 .. 1 87 [] 86.4 2.6e-24
CP001807_2633 1/1 123 190 .. 1 87 [] 79.7 2.1e-22
CP001807_2284 1/1 247 312 .. 1 87 [] 76.8 1.4e-21
CP001807_1826 1/1 835 900 .. 1 87 [] 76.7 1.4e-21
CP001807_0977 1/1 234 300 .. 1 87 [] 72.2 2.7e-20
CP001807_2618 1/1 199 263 .. 1 87 [] 70.8 6.7e-20
CP001807_2403 1/1 432 498 .. 1 87 [] 68.5 3.1e-19
CP001807_0505 1/1 254 320 .. 1 87 [] 68.3 3.5e-19
CP001807_2379 1/1 388 456 .. 1 87 [] 68.3 3.6e-19
CP001807_2719 1/1 473 541 .. 1 87 [] 66.3 1.3e-18
CP001807_0973 1/1 260 328 .. 1 87 [] 55.1 2e-15
CP001807_1171 1/1 418 484 .. 1 87 [] 52.1 1.4e-14
CP001807_1353 1/1 250 316 .. 1 87 [] 50.3 4.3e-14
CP001807_2377 1/1 262 328 .. 1 87 [] 48.7 1.3e-13
CP001807_0722 1/1 1108 1181 .. 1 87 [] 41.1 1.8e-11
CP001807_1428 1/1 231 297 .. 1 87 [] 40.1 3.5e-11
CP001807_0785 1/1 18 83 .. 1 87 [] 27.0 1.8e-07

Alignments of top-scoring domains:
CP001807_1680: domain 1 of 1, from 815 to 880: score 102.4, E = 7.5e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTP+++++g++elLle +l+ eq
CP001807_1 815 LKSEFLANMSHEIRTPMNGVLGMTELLLE---------MDLTKEQ-- 850

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re +e+i+r++e ll ++nd+Ld+s+ieag
CP001807_1 851 ----------RECVEIIHRSGETLLTILNDILDFSKIEAG 880

CP001807_0997: domain 1 of 1, from 799 to 867: score 97.1, E = 2.5e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks flan+sHE+RTPLt+I+g+aelL eel+ t + e+
CP001807_0 799 LKSAFLANMSHEIRTPLTGILGFAELLDEELE------TRQQEDL-- 837

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++++i+r+a+rll L+nd+Ldls+iea+
CP001807_0 838 ----------REFTHIIDRSARRLLTLLNDILDLSKIEAN 867

CP001807_2720: domain 1 of 1, from 553 to 621: score 92.6, E = 4.6e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k flan+sHE+RTPL++I+g+aelL e+l ++ + e +
CP001807_2 553 LKAAFLANMSHEIRTPLNSILGFAELLDEQL-------AASGQESL- 591

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++ +i+r+++rllrLind+L+lsr+ea
CP001807_2 592 ----------REFTGIIQRSGRRLLRLINDILELSRLEAD 621

CP001807_0182: domain 1 of 1, from 450 to 514: score 86.6, E = 2.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks +l+n+sHE+RTPL++++g+ae+L+e el+e++
CP001807_0 450 LKSTLLSNISHEIRTPLAGVIGFAEVLEE----------ELDEPH-- 484

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ i+++++rll+ +n lLdl+rieag
CP001807_0 485 ----------RELAALIRDSGRRLLETLNTLLDLARIEAG 514

CP001807_1480: domain 1 of 1, from 676 to 743: score 86.4, E = 2.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef++++ HELRTPLt+Ir+++e++ ++ ++l+e qr
CP001807_1 676 LKDEFISTITHELRTPLTSIRAFSEIMHAN--------PNLPEAQR- 713

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l +i++eaerl rLin++L+l ++e+g
CP001807_1 714 ----------QEFLGIIIKEAERLTRLINQVLTLQKLESG 743

CP001807_2633: domain 1 of 1, from 123 to 190: score 79.7, E = 2.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++efl n+sHEL+TP+ +Irg++e+Lle ++ +e +r
CP001807_2 123 YRREFLGNVSHELKTPIFSIRGFTETLLE--------ADPGDEATR- 160

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +le+ilr a+rl +L++dl ++sr+e+g
CP001807_2 161 ----------RAFLEKILRNADRLANLVRDLTEISRLETG 190

CP001807_2284: domain 1 of 1, from 247 to 312: score 76.8, E = 1.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks flan+ HE+RTPL++I+gya++L+e el+++ +
CP001807_2 247 LKSTFLANMNHEIRTPLAGILGYAQILEE----------ELNDPMH- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ ++i+++++rll+ ++ lL +s +eag
CP001807_2 283 ----------CEMAQVIKQSGQRLLDTLDALLYMSCLEAG 312

CP001807_1826: domain 1 of 1, from 835 to 900: score 76.7, E = 1.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ l++ HELRTPL+aI+g+a++++e ++ ++ +
CP001807_1 835 AKETILSTTTHELRTPLSAILGFASVIKE---------ETDNPLH-- 870

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+le i+++++rll+ ind+Ldl+r+++g
CP001807_1 871 ----------KEFLEHIEESGHRLLATINDILDLARLRSG 900

CP001807_0977: domain 1 of 1, from 234 to 300: score 72.2, E = 2.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+ n+sHE R+P+ +I gy+e+L +++++e+r
CP001807_0 234 LQTEFIGNVSHEVRNPIFSIGGYLEALAS---------PTMDPETR- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+e++l+ ++rl++L ndl +++r+e
CP001807_0 271 ----------KRYVEKALQNLNRLNNLFNDLIEIARLEYR 300

CP001807_2618: domain 1 of 1, from 199 to 263: score 70.8, E = 6.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+n+ HELRTPL++I+g+a++L e e++ee
CP001807_2 199 FRNTLLSNMHHELRTPLAGILGAAQILNE----------EAPEEL-- 233

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++++++++++rll+L+ +l l+riea
CP001807_2 234 ----------REFVQIVEHSGRRLLHLLTNLVLLARIEAD 263

CP001807_2403: domain 1 of 1, from 432 to 498: score 68.5, E = 3.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks +l nlsHELRTPLt+++g+a++++e e+ + ++
CP001807_2 432 LKSTLLTNLSHELRTPLTTVIGFADVIRE----------EAAPGTL- 467

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++e+ + i + ++rll+L ++++dl+++ea+
CP001807_2 468 ---------FHEFAQLIADGGRRLLHLMEEVMDLAQLEAQ 498

CP001807_0505: domain 1 of 1, from 254 to 320: score 68.3, E = 3.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an++HEL+TPL+ + g ael+l+ ++s +
CP001807_0 254 ELRRFTANAAHELKTPLAILHGQAELALR---------RPRSTDS-- 289

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr l+ il+++e++ rL++ lL lsr++++
CP001807_0 290 ---------YRTTLRQILDQTEQMTRLVQHLLLLSRLDQP 320

CP001807_2379: domain 1 of 1, from 388 to 456: score 68.3, E = 3.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L PL +r++aelL+ee++ + l++e
CP001807_2 388 ELQDFAYIASHDLQEPLRKVRAFAELLKEEYE------SVLDDEG-- 426

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl++++++a+r++rLi+dlL++sr ++
CP001807_2 427 ----------RYYLDRMQDAAQRMSRLIEDLLTFSRVTTQ 456

CP001807_2719: domain 1 of 1, from 473 to 541: score 66.3, E = 1.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fl + HE+RTP+++I+gya+lL++el + ++e
CP001807_2 473 LKSRFLELMTHEIRTPISTILGYADLLRDELA------DRIPPEL-- 511

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++++i+++++rll ++d+Ldls +e++
CP001807_2 512 ----------LEFIDVIRESGRRLLGTLSDVLDLSLLETQ 541

CP001807_0973: domain 1 of 1, from 260 to 328: score 55.1, E = 2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++a++ H+LRTPL+a++gyae +++ l + + e +
CP001807_0 260 MRRELMAGIGHDLRTPLAALLGYAEEARRLL-------QQGNTEAA- 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l ++++ +++l+rL++ l +ls +e +
CP001807_0 299 ----------VEALAVVEERGRHLQRLVEALFELSLLERP 328

CP001807_1171: domain 1 of 1, from 418 to 484: score 52.1, E = 1.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ +l + +H+LR+PL++++g++++ +eel + ++++
CP001807_1 418 LKTHLLGATAHDLRNPLSSVQGLIQTVREEL--------PPDSPH-- 454

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l+ ++ +++r+l i++l + s +e+g
CP001807_1 455 ----------RELLKLAEAASQRMLGTIEQLITASALESG 484

CP001807_1353: domain 1 of 1, from 250 to 316: score 50.3, E = 4.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+ n++HEL TPL+a+r +e++l+ ++ +
CP001807_1 250 RERRFTDNAAHELLTPLSALRSELEVALR---------RPRQAAY-- 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yre le +lr++er+ + ++ lL l+r+e
CP001807_1 286 ---------YREVLEEALRDVERMTETVRGLLHLARLERT 316

CP001807_2377: domain 1 of 1, from 262 to 328: score 48.7, E = 1.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++++++H+L++ I++ + +L ++l++e+r
CP001807_2 262 SIGRLVSGMAHDLNNLFVPILLGVRMLAQ---------DTLDPEKR- 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i+r+aer +L++++L ++r +g
CP001807_2 299 ----------ARALGMIQRSAERGADLVRQVLAFARGMEG 328

CP001807_0722: domain 1 of 1, from 1108 to 1181: score 41.1, E = 1.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e+++ ++HE+++PLt +++ ++ L++ + + ++++ r
CP001807_0 1108 AWREMARQVAHEIKNPLTPMKLSVQHLRRAF-------ARRDDPGRF 1147

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eL +++ + t++++++ l+++ d+ +l+r+ +
CP001807_0 1148 AEL------FERVTTTLIEQIDTLSHIAADFSTLARMPTR 1181

CP001807_1428: domain 1 of 1, from 231 to 297: score 40.1, E = 3.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++H+L TPL++++g +elL++ + ls+eq+
CP001807_1 231 LWVGMAKEAAHQLGTPLSSLMGWVELLRT---------DSLSPEQQ- 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l+ i++++ rl r +++ ++ +
CP001807_1 268 ----------REALDEIEKDIARLKRVAQRFSEIGSLPRL 297

CP001807_0785: domain 1 of 1, from 18 to 83: score 27.0, E = 1.8e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ l+H LR +t+I g+++lL + t +++eq
CP001807_0 18 LLANLAQVLAHRLRGLITSIEGFTDLLAD---------TLATPEQ-- 53

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ ++ +++ +++r++++l +sr ++
CP001807_0 54 ----------RELALRVFESTASIERILSELQWYSRPLHP 83


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 6 0|=
-13 20 2|*==
-12 72 63|======*=
-11 203 327|======================= *
-10 342 608|====================================== *
-9 476 628|===================================================== *
-8 490 470|====================================================*==
-7 401 296|================================*============
-6 282 170|==================*=============
-5 189 93|==========*==========
-4 107 50|=====*======
-3 66 26|==*=====
-2 39 13|=*===
-1 23 7|*==
0 10 3|*=
1 5 1|*
2 4 1|*
3 4 0|=
4 2 0|=
5 0 0|
> 6 25 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 613.5488
P(chi-square) = 0

Total sequences searched: 2766

Whole sequence top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: