Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Data for CP001814  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001814.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001814_7893 CDS_9169612-9168119 108.3 2.8e-30 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001814_7893 1/1 303 372 .. 1 76 [. 108.3 2.8e-30

Alignments of top-scoring domains:
CP001814_7893: domain 1 of 1, from 303 to 372: score 108.3, E = 2.8e-30
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQar+ + +e +eaL+E+++RV S
CP001814_7 303 EIHHRVKNNLQTVAALLRLQARRLQLPEG-----REALEEAVRRVGS 344

mAliHEeLYksedldtvdfseYlekLten<-*
+A++HE L+ + d ++vdf++ +++++
CP001814_7 345 IAIVHETLSHTPD-EQVDFDDIADRVIAM 372


Histogram of all scores:
score obs exp (one = represents 45 sequences)
----- --- ---
-15 17 0|=
-14 52 0|==
-13 164 55|=*==
-12 560 587|=============*
-11 2629 1635|====================================*======================
-10 1997 2117|============================================= *
-9 1323 1788|============================== *
-8 1016 1199|======================= *
-7 462 712|=========== *
-6 392 396|========*
-5 148 213|====*
-4 93 113|==*
-3 48 59|=*
-2 15 31|*
-1 9 16|*
0 10 8|*
1 3 4|*
2 4 2|*
> 3 3 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 1094.0188
P(chi-square) = 0

Total sequences searched: 8945

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: