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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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32 projects found  

1 accessions found for Sulfurospirillum deleyianum DSM 6946  

Data for CP001816  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001816.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001816_0586 CDS_572826-569620 102.4 6.1e-29 1
CP001816_0905 CDS_915080-921187 95.6 5.1e-27 1
CP001816_1659 CDS_1705845-1707500 88.6 5e-25 1
CP001816_1440 CDS_1481590-1482615 64.9 2.7e-18 1
CP001816_2013 CDS_2053857-2052436 53.7 4e-15 1
CP001816_1851 CDS_1907273-1908676 45.2 9.9e-13 1
CP001816_0631 CDS_628826-627804 43.4 3.4e-12 1
CP001816_1456 CDS_1499307-1501196 38.6 7.5e-11 1
CP001816_2003 CDS_2041779-2043488 35.9 4.4e-10 1
CP001816_1961 CDS_2001666-2000146 33.0 2.9e-09 1
CP001816_1367 CDS_1397738-1398973 33.0 3e-09 1
CP001816_0096 CDS_91817-90630 32.8 3.4e-09 1
CP001816_2069 CDS_2105730-2106968 31.9 6e-09 1
CP001816_0255 CDS_240650-239511 29.6 2.6e-08 1
CP001816_1558 CDS_1599040-1597547 28.6 5.2e-08 1
CP001816_0234 CDS_220875-219565 26.9 1.6e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001816_0586 1/1 387 452 .. 1 87 [] 102.4 6.1e-29
CP001816_0905 1/1 1311 1376 .. 1 87 [] 95.6 5.1e-27
CP001816_1659 1/1 33 98 .. 1 87 [] 88.6 5e-25
CP001816_1440 1/1 109 176 .. 1 87 [] 64.9 2.7e-18
CP001816_2013 1/1 260 326 .. 1 87 [] 53.7 4e-15
CP001816_1851 1/1 250 317 .. 1 87 [] 45.2 9.9e-13
CP001816_0631 1/1 132 196 .. 1 87 [] 43.4 3.4e-12
CP001816_1456 1/1 417 479 .. 1 87 [] 38.6 7.5e-11
CP001816_2003 1/1 323 396 .. 1 87 [] 35.9 4.4e-10
CP001816_1961 1/1 275 346 .. 1 87 [] 33.0 2.9e-09
CP001816_1367 1/1 209 267 .. 1 87 [] 33.0 3e-09
CP001816_0096 1/1 187 252 .. 1 87 [] 32.8 3.4e-09
CP001816_2069 1/1 211 269 .. 1 87 [] 31.9 6e-09
CP001816_0255 1/1 172 233 .. 1 87 [] 29.6 2.6e-08
CP001816_1558 1/1 281 343 .. 1 87 [] 28.6 5.2e-08
CP001816_0234 1/1 216 282 .. 1 87 [] 26.9 1.6e-07

Alignments of top-scoring domains:
CP001816_0586: domain 1 of 1, from 387 to 452: score 102.4, E = 6.1e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++I+g++elL++ ++l+ee+
CP001816_0 387 AKSIFLANMSHEIRTPLNGIIGFTELLKN---------SDLDEEK-- 422

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++++i++++e ll++in++Ldls+ e++
CP001816_0 423 ----------REFVDVIEKSSENLLAIINNILDLSKVESN 452

CP001816_0905: domain 1 of 1, from 1311 to 1376: score 95.6, E = 5.1e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks flan+sHE+RTP++aI+g+a+l+l tels +q
CP001816_0 1311 VKSAFLANMSHEIRTPMNAIIGMAHLALQ---------TELSNQQ-- 1346

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl +i++++++ll +ind+Ld+s+ieag
CP001816_0 1347 ----------RNYLVKIDSASKHLLGIINDILDFSKIEAG 1376

CP001816_1659: domain 1 of 1, from 33 to 98: score 88.6, E = 5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHEL+TP+++I+g+ elL +l+e++
CP001816_1 33 IKSQFLANMSHELKTPMNTIIGMGELLVH---------KKLPEKE-- 68

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++i ++a++l ++ind+Ld+s+iea+
CP001816_1 69 ----------QRCLHKIVESAHHLMDIINDILDFSKIEAN 98

CP001816_1440: domain 1 of 1, from 109 to 176: score 64.9, E = 2.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ +l +lsH+L+TPL++I+g + lLle d++ls e++
CP001816_1 109 IKEILLNTLSHDLKTPLSSILGSITLLLE--------DQKLSQETQ- 146

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ i+++++r+ rLin+lLd +r+
CP001816_1 147 ----------KTLLNDIKNSSDRMHRLINNLLDNARLKDK 176

CP001816_2013: domain 1 of 1, from 260 to 326: score 53.7, E = 4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f n+sHEL+TPLt ++g +e+ l+ e+s e+
CP001816_2 260 QVKQFGQNASHELKTPLTIMQGEIEVGLR---------KERSGEE-- 295

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +l++i +e+ +l + i+ +L ls +
CP001816_2 296 ---------YQAILRKISHELSHLHEVIEKILFLSSNTRN 326

CP001816_1851: domain 1 of 1, from 250 to 317: score 45.2, E = 9.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+ ++++sHE+++ +++I+gya++Ll+ d+++s + +
CP001816_1 250 QRSDVISAISHEFKNSIASIMGYAQTLLD--------DPNASVQIK- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +i + ++ ++ +i++l ++ e+g
CP001816_1 288 ----------ERFLGKIVQNGQKISTMIDRLALTTKFENG 317

CP001816_0631: domain 1 of 1, from 132 to 196: score 43.4, E = 3.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +a+lsHE+R+P+ +++++a++Ll+ + ++
CP001816_0 132 SMGQVAAHLSHEIRNPIGSVSLLASTLLK----------KVDPSI-- 166

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i++++ r +r+i L +++ +
CP001816_0 167 ----------KPIVTEIKKSIWRVERIIKATLLFTKNVQI 196

CP001816_1456: domain 1 of 1, from 417 to 479: score 38.6, E = 7.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +fl++ HE++TPL++I+ ++el ++e+ ++
CP001816_1 417 SHKQFLRYTVHEMNTPLSVIMSNIELHEMEF-------GK------- 449

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yle i+ +++++ ++ +dl l r +
CP001816_1 450 ----------SVYLENIEVAVKSIFSMYDDLSYLVRKDRI 479

CP001816_2003: domain 1 of 1, from 323 to 396: score 35.9, E = 4.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++a++ HE++TPLt I+g+ e+L ++ + ++ +r
CP001816_2 323 TIGRMAAGITHEINTPLTYIKGNFEMLIDDIM------AIVPDGTRK 363

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++i++ +er++++i +++ s+ ++
CP001816_2 364 NVM-------LKDSQSIQEGIERIESIIGTMREASQKSHE 396

CP001816_1961: domain 1 of 1, from 275 to 346: score 33.0, E = 2.9e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fl HEL+TPL+aI+ +a+ L + + ++ +e r
CP001816_1 275 AKDAFLVLFTHELKTPLNAILNFAQYLHKHM-------PNIDEVPRE 314

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++L +le i+++a ++l+ + ++Ldl ++++
CP001816_1 315 KRL--------YLLEQIYKSASSMLDNVTNILDLGKLRHD 346

CP001816_1367: domain 1 of 1, from 209 to 267: score 33.0, E = 3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ fl+n+ HEL+TP+t r ae+L+
CP001816_1 209 SRQLFLRNIMHELKTPITKGRISAEMLEQ------------------ 237

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+++ e l+ Lin++ +++i +g
CP001816_1 238 ----------GKQKERLIATFEKLELLINEFASIEQITSG 267

CP001816_0096: domain 1 of 1, from 187 to 252: score 32.8, E = 3.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ + HEL+TP++aI+ ++e+++ ++l++
CP001816_0 187 LLDRFIKDTTHELNTPINAILSNIEMIEL---------ETLDSAL-- 222

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++ +a+ +++L +dl l +
CP001816_0 223 ----------SKKIKRMSIAAKTISNLYDDLTYLVLSHHL 252

CP001816_2069: domain 1 of 1, from 211 to 269: score 31.9, E = 6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ fl+n+ HEL+TP+t ++++e++++
CP001816_2 211 SRQLFLRNIMHELKTPITKGKLASEMIED------------------ 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y +++++ +r ++L++++ ++++ a
CP001816_2 240 ----------ATYAKILQNVFKRQEALLEEFSRIEKLSAD 269

CP001816_0255: domain 1 of 1, from 172 to 233: score 29.6, E = 2.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ ++ HEL+TPL +++++e L +l +q
CP001816_0 172 RMQHFFTDVMHELKTPLGIMQLNLESLAQ----------HLHNKQ-- 206

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++ l ++ l+ L +dl l + +
CP001816_0 207 -------------LSRSLAALSTLSTLYEDLEYLIKNKTI 233

CP001816_1558: domain 1 of 1, from 281 to 343: score 28.6, E = 5.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ n+ HE++TPL+ I+++++l +++k
CP001816_1 281 KQDRFIKNAIHEINTPLSIILMNIDLYNLKYEK-------------- 313

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl +i+ +++ l+++ dl + + +
CP001816_1 314 ----------NRYLLKIEAAVKVLDNIYGDLEYIVKKDRV 343

CP001816_0234: domain 1 of 1, from 216 to 282: score 26.9, E = 1.6e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ e++ +++HEL+TPL+++++ e+ l + +e+
CP001816_0 216 SQKELFIGAAHELKTPLAVMKTKNEVTLL---------KLREAEK-- 251

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e l++ + ++ ++++i ++L++ r e
CP001816_0 252 ---------YIETLKSNNQTINDMNKMIGNILEIGRQEGA 282


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-16 1 0|=
-15 2 0|=
-14 4 0|=
-13 26 1|*===
-12 110 51|======*=======
-11 252 268|================================ *
-10 418 498|===================================================== *
-9 417 514|===================================================== *
-8 344 385|=========================================== *
-7 265 242|==============================*===
-6 142 139|=================*
-5 121 76|=========*======
-4 57 41|=====*==
-3 30 21|==*=
-2 15 11|=*
-1 14 5|*=
0 5 3|*
1 3 1|*
2 2 0|=
> 3 37 -|=====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 151.5407
P(chi-square) = 7.219e-27

Total sequences searched: 2265

Whole sequence top hits:
tophits_s report:
Total hits: 16
Satisfying E cutoff: 16
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 16
Satisfying E cutoff: 16
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: