Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
25 projects found  

1 accessions found for Thermanaerovibrio acidaminovorans DSM 6589  

Data for CP001818  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001818.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001818_1362 CDS_1418778-1422866 100.9 1.3e-28 1
CP001818_1711 CDS_1821054-1823075 76.7 9.4e-22 1
CP001818_1440 CDS_1510818-1508185 71.1 3.5e-20 1
CP001818_0088 CDS_98893-97130 65.9 1.1e-18 1
CP001818_0156 CDS_169064-171817 65.8 1.2e-18 1
CP001818_0708 CDS_749661-748558 52.8 5.4e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001818_1362 1/1 897 963 .. 1 87 [] 100.9 1.3e-28
CP001818_1711 1/1 367 436 .. 1 87 [] 76.7 9.4e-22
CP001818_1440 1/1 396 461 .. 1 87 [] 71.1 3.5e-20
CP001818_0088 1/1 355 419 .. 1 87 [] 65.9 1.1e-18
CP001818_0156 1/1 201 266 .. 1 87 [] 65.8 1.2e-18
CP001818_0708 1/1 144 210 .. 1 87 [] 52.8 5.4e-15

Alignments of top-scoring domains:
CP001818_1362: domain 1 of 1, from 897 to 963: score 100.9, E = 1.3e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP++aI+gy+++L++ d+ l+++q
CP001818_1 897 AKSAFLANMSHEIRTPMNAILGYTQILER--------DPSLGPKQ-- 933

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++ i+r++++ll+L+ndlLdls+ieag
CP001818_1 934 ----------REKVQAIIRSGNHLLELLNDLLDLSKIEAG 963

CP001818_1711: domain 1 of 1, from 367 to 436: score 76.7, E = 9.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s++++ +sHE+RTPL++I+gy++lL+e++ + l+ +q +
CP001818_1 367 ARSRLMSRVSHEIRTPLNSIMGYLDLLKERG-------PSLNLPQDA 406

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ti+r++ +ll+ +++++d+s ieag
CP001818_1 407 ----------SEWLDTIQRSGYHLLSVVEEIMDMSTIEAG 436

CP001818_1440: domain 1 of 1, from 396 to 461: score 71.1, E = 3.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak f++++sHE+RTP++a+ g++e+Ll+ + ++e
CP001818_1 396 AKMAFVSHISHEIRTPMNAVVGLSEMLLD---------SCEDPEI-- 431

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re le i++++ +l +++ d+Ldl+ eag
CP001818_1 432 ----------REDLELIHQASMSLTEILGDILDLAAVEAG 461

CP001818_0088: domain 1 of 1, from 355 to 419: score 65.9, E = 1.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f++++ HE+ TPLt+Irg+aelL++++ ++
CP001818_0 355 ALRRFVSDVGHEFQTPLTVIRGAAELLRDYA-----------LGDN- 389

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++il++ +rl +++++lL l+r e g
CP001818_0 390 ----------LMLIDRILEQQRRLTDMVDRLLLLTRFEGG 419

CP001818_0156: domain 1 of 1, from 201 to 266: score 65.8, E = 1.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ fla++ HE+R+PL +++g++ + l +el+++
CP001818_0 201 LKDAFLAHIGHEIRNPLGGMMGLLRTTLG---------AELPPPV-- 236

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e++lre e l++L++dlLd+s++eag
CP001818_0 237 ----------AHRMEVLLRECETLNSLLDDLLDYSKLEAG 266

CP001818_0708: domain 1 of 1, from 144 to 210: score 52.8, E = 5.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
s+fl+++ HE+RTPL+ I+g +el+l+ e+s +
CP001818_0 144 LNSQFLSDAGHEIRTPLSIIKGRIELALM---------KERSGPY-- 179

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+e le +lr++ +l+rL +L+lsr+e
CP001818_0 180 ---------YKEKLEDVLRQVCSLERLTKGILELSRLEGM 210


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 2 0|=
-13 14 1|*==
-12 57 39|======*===
-11 160 206|=========================== *
-10 307 382|==================================================== *
-9 318 394|===================================================== *
-8 276 295|============================================== *
-7 218 186|==============================*======
-6 149 107|=================*=======
-5 98 58|=========*=======
-4 58 31|=====*====
-3 34 16|==*===
-2 15 8|=*=
-1 8 4|*=
0 8 2|*=
1 2 1|*
2 4 0|=
3 0 0|
> 4 10 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 141.7301
P(chi-square) = 1.862e-25

Total sequences searched: 1738

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: