Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
25 projects found  

1 accessions found for Thermanaerovibrio acidaminovorans DSM 6589  

Data for CP001818  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001818.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001818_1547 CDS_1645329-1643971 43.8 5.4e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001818_1547 1/1 251 315 .. 1 68 [. 43.8 5.4e-13

Alignments of top-scoring domains:
CP001818_1547: domain 1 of 1, from 251 to 315: score 43.8, E = 5.4e-13
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
E +R +RE+HD+ Q+ +a++ + lar+ l dp++a +l +
CP001818_1 251 EKERVSREIHDGPVQTVTALIQRIRLARMSL---GDPDRALNELSVA 294

relarealaevRrllgdLRpa<-*
+ a e+ +e+R l +L p+
CP001818_1 295 ESVAVECVRELRGLCDQLAPP 315


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-15 1 0|=
-14 5 0|=
-13 11 0|===
-12 20 19|===*
-11 52 159|=========== *
-10 185 369|===================================== *
-9 268 419|====================================================== *
-8 282 323|========================================================= *
-7 235 203|========================================*======
-6 216 115|======================*=====================
-5 188 61|============*=========================
-4 93 32|======*============
-3 64 16|===*=========
-2 57 8|=*==========
-1 23 4|*====
0 13 2|*==
1 12 1|*==
2 3 0|=
3 2 0|=
4 4 0|=
> 5 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1104.6698
P(chi-square) = 0

Total sequences searched: 1738

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: