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Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Sanguibacter keddieii DSM 10542  

Data for CP001819  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001819.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001819_2194 CDS_2513530-2511800 92.7 5.6e-26 1
CP001819_3187 CDS_3641867-3643447 89.0 6.3e-25 1
CP001819_0780 CDS_919842-918133 83.8 1.9e-23 1
CP001819_3067 CDS_3503038-3504675 75.7 3.8e-21 1
CP001819_1627 CDS_1874574-1872910 74.0 1.1e-20 1
CP001819_3474 CDS_3986031-3987749 71.3 6.4e-20 1
CP001819_0906 CDS_1075501-1077225 68.5 4.3e-19 1
CP001819_2628 CDS_3015573-3013012 66.9 1.1e-18 1
CP001819_0928 CDS_1107142-1105994 62.5 2.1e-17 1
CP001819_1319 CDS_1533815-1531974 61.7 3.5e-17 1
CP001819_3106 CDS_3550428-3549244 58.3 3.2e-16 1
CP001819_3653 CDS_4192170-4190908 57.2 6.5e-16 1
CP001819_0824 CDS_967314-968621 55.8 1.6e-15 1
CP001819_0163 CDS_176618-178096 53.7 6.6e-15 1
CP001819_2459 CDS_2815896-2817347 51.3 3.1e-14 1
CP001819_2232 CDS_2553483-2551825 47.2 4.5e-13 1
CP001819_2608 CDS_2994333-2993227 39.4 7.1e-11 1
CP001819_0255 CDS_289017-288100 38.3 1.5e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001819_2194 1/1 348 416 .. 1 87 [] 92.7 5.6e-26
CP001819_3187 1/1 258 325 .. 1 87 [] 89.0 6.3e-25
CP001819_0780 1/1 338 409 .. 1 87 [] 83.8 1.9e-23
CP001819_3067 1/1 304 371 .. 1 87 [] 75.7 3.8e-21
CP001819_1627 1/1 330 395 .. 1 87 [] 74.0 1.1e-20
CP001819_3474 1/1 337 408 .. 1 87 [] 71.3 6.4e-20
CP001819_0906 1/1 286 353 .. 1 87 [] 68.5 4.3e-19
CP001819_2628 1/1 616 684 .. 1 87 [] 66.9 1.1e-18
CP001819_0928 1/1 128 192 .. 1 87 [] 62.5 2.1e-17
CP001819_1319 1/1 378 442 .. 1 87 [] 61.7 3.5e-17
CP001819_3106 1/1 149 215 .. 1 87 [] 58.3 3.2e-16
CP001819_3653 1/1 201 266 .. 1 87 [] 57.2 6.5e-16
CP001819_0824 1/1 200 266 .. 1 87 [] 55.8 1.6e-15
CP001819_0163 1/1 269 334 .. 1 87 [] 53.7 6.6e-15
CP001819_2459 1/1 217 283 .. 1 87 [] 51.3 3.1e-14
CP001819_2232 1/1 296 364 .. 1 87 [] 47.2 4.5e-13
CP001819_2608 1/1 147 211 .. 1 87 [] 39.4 7.1e-11
CP001819_0255 1/1 73 138 .. 1 87 [] 38.3 1.5e-10

Alignments of top-scoring domains:
CP001819_2194: domain 1 of 1, from 348 to 416: score 92.7, E = 5.6e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef+ ++sHELRTPL++I+gy+elL++ +d++l++eq
CP001819_2 348 LKDEFVGMISHELRTPLSSILGYLELLRD------EEDGPLTAEQ-- 386

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl++++r a+rllrL+ dlL ++ eag
CP001819_2 387 ----------TQYLDVAERNAQRLLRLVGDLLFTAQVEAG 416

CP001819_3187: domain 1 of 1, from 258 to 325: score 89.0, E = 6.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a++sHELRTPL++Irgyael ++ + ++ + ++
CP001819_3 258 QVRQFVADASHELRTPLASIRGYAELVRR-------SPDDVPTDT-- 295

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++i++ea r+ +L++dlL l+r++ag
CP001819_3 296 ----------LRALDRIESEALRMGALVEDLLLLARLDAG 325

CP001819_0780: domain 1 of 1, from 338 to 409: score 83.8, E = 1.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
k++f+ ++sHELRTPLt+I+gy+el+ e ++ gd +lsee+
CP001819_0 338 TKDRFVGTVSHELRTPLTSIMGYLELIAE----DdSTGDNPLSEET- 379

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+ +++r ae+ll+L++dlL+ ++i++g
CP001819_0 380 -----------REYVGIARRNAEQLLSLVSDLLTTAQIDSG 409

CP001819_3067: domain 1 of 1, from 304 to 371: score 75.7, E = 3.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++++sHELRTPL+++rgy el ++ ++l+ +++
CP001819_3 304 RMRRFVSDASHELRTPLATVRGYGELYRM---------GALTTPEAM 341

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++i+++a r+ L+ndlL l+r+++g
CP001819_3 342 ----------DDTMRRIEDSATRMGTLVNDLLALARLDEG 371

CP001819_1627: domain 1 of 1, from 330 to 395: score 74.0, E = 1.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a++sHELRTPLt+I+gy+el l+ +el++
CP001819_1 330 ARDDLIASVSHELRTPLTSILGYLELVLD---------DELPDHA-- 365

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r le+++r ++rll+L+ ++L sr +
CP001819_1 366 ----------RPSLEIVERNSNRLLDLVTEILSASRQASK 395

CP001819_3474: domain 1 of 1, from 337 to 408: score 71.3, E = 6.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f++++sHELRTPLt+I+gy+el++e+++ d+e +
CP001819_3 337 VKDDFVSTVSHELRTPLTSIIGYLELIEEGYE-----DSEFELTD-- 376

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ le++ r a rll+L++dlL+ ++ +g
CP001819_3 377 --------EVHGQLEVVARNASRLLALVSDLLTTAQHASG 408

CP001819_0906: domain 1 of 1, from 286 to 353: score 68.5, E = 4.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt++r+++e++ e +++l++
CP001819_0 286 VQRRFVSDVSHELRTPLTTVRMASEMIYE-------NRDDLDPVL-- 323

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e + +++r ++L+ dlL++sr +ag
CP001819_0 324 ----------KRSAELLSAQLDRFEDLLADLLEISRFDAG 353

CP001819_2628: domain 1 of 1, from 616 to 684: score 66.9, E = 1.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+LRTPL++Ir++++ L + d l++e++
CP001819_2 616 TRTALLAAVSHDLRTPLASIRAAIDGLSA-------ADVQLDAEDQ- 654

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ti ++ rl++Li +lLdlsri++g
CP001819_2 655 ----------AALLDTIGGSTARLEALIANLLDLSRIQTG 684

CP001819_0928: domain 1 of 1, from 128 to 192: score 62.5, E = 2.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++an+sHELRTP++a+ + +e L +++ e ++ ++
CP001819_0 128 VRRELIANVSHELRTPVAALHAQLENLVDGV-------VEPTPATM- 166

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+t+l ++erl rLi lLdlsr eag
CP001819_0 167 --------------QTALTQTERLTRLIAYLLDLSRVEAG 192

CP001819_1319: domain 1 of 1, from 378 to 442: score 61.7, E = 3.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a++sHELRTPLt++rg +e ++e + + +
CP001819_1 378 QQQQMVADVSHELRTPLTTLRGWLEGAQE---------GVVPTDA-- 413

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ e+ +l+++ dl +lsr+++g
CP001819_1 414 -----------HLVDLLHGETMHLQQITADLQTLSRADSG 442

CP001819_3106: domain 1 of 1, from 149 to 215: score 58.3, E = 3.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ n+sHEL+TP+ aI ++ae++++ ++ +++ +
CP001819_3 149 IRRDFTVNVSHELKTPVGAIALLAETMQD---------AADDPDAV- 185

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + ++++e+ rl +L+ ++ +lsr++
CP001819_3 186 ----------RHFAGRMQKESMRLGALVHEIIELSRLQVA 215

CP001819_3653: domain 1 of 1, from 201 to 266: score 57.2, E = 6.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f++++sHELR PL+a+r yae++ + + + +
CP001819_3 201 AQRRFVSDASHELRSPLAAMRQYAEVAAA----------HPDRVAV- 236

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ t+l e+ r ++L++ lL l+r+++
CP001819_3 237 ----------TELAGTVLAEGARVQDLVESLLLLARLDER 266

CP001819_0824: domain 1 of 1, from 200 to 266: score 55.8, E = 1.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f++++sH+LRTPLta+++ +e + + ++ ++e
CP001819_0 200 AERQFASDASHQLRTPLTALSMRLEEIAM--------AAPDNAEV-- 236

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ l+++erl r ++dlL sr g
CP001819_0 237 ----------QEEARISLEQVERLVRVVDDLLSRSRTSGG 266

CP001819_0163: domain 1 of 1, from 269 to 334: score 53.7, E = 6.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a+++HELR P++a+r +++++ ++
CP001819_0 269 RQRAFVADAAHELRSPVAALRVSVDIAQQ---------HPDAYTS-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ + e++rl+rL++dlL l+r++a
CP001819_0 305 ----------AELAADLGGEVQRLDRLVDDLLVLARLGAT 334

CP001819_2459: domain 1 of 1, from 217 to 283: score 51.3, E = 3.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPLt r +e++l+ d+e++e++
CP001819_2 217 GQRRFTANASHELRTPLTITRSVLEVALT--------DPECPEPT-- 253

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ e++l +r rLi+ lL l+ ++
CP001819_2 254 ----------RELAEKLLAVNHRQGRLIEGLLALASADLV 283

CP001819_2232: domain 1 of 1, from 296 to 364: score 47.2, E = 4.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ +sH+L PL + +++lL++++ +el+e
CP001819_2 296 DLEQFAYVASHDLQEPLRKVASFTQLLQKRYG------GELDERA-- 334

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+e + + a+r++rLi+dlL +sr +
CP001819_2 335 ----------DQYIEFAVDGAKRMQRLIQDLLGFSRVGRS 364

CP001819_2608: domain 1 of 1, from 147 to 211: score 39.4, E = 7.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+an+sHELRTP ++Ir+++e++++ d++++ eq+
CP001819_2 147 EHRRFAANASHELRTPHAVIRTMLEVARA--------DPDRDVEQL- 184

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+++ er +L + lL l+r+++
CP001819_2 185 -------------LERLEIVNERSIALTEALLALARADHA 211

CP001819_0255: domain 1 of 1, from 73 to 138: score 38.3, E = 1.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++fl l HEL++PLtaI ++a + t+ +++
CP001819_0 73 AHRRFLDRLDHELKNPLTAIHAAAASVSA---------TTTDDDR-- 108

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +i+ +a r+ rL+ dl+ ++ ++++
CP001819_0 109 ----------HSPVAVIDAQAARMGRLVGDLRKIAALDSQ 138


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 1 0|=
-14 10 0|=
-13 41 2|*===
-12 137 84|======*====
-11 360 439|============================ *
-10 603 815|=============================================== *
-9 727 842|======================================================== *
-8 682 630|================================================*====
-7 482 397|==============================*=======
-6 289 228|=================*=====
-5 152 125|=========*==
-4 88 67|=====*=
-3 54 35|==*==
-2 32 18|=*=
-1 15 9|*=
0 9 5|*
1 2 2|*
2 3 1|*
3 1 0|=
> 4 22 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 193.1751
P(chi-square) = 8.333e-35

Total sequences searched: 3710

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: