hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001819.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001819_0816 CDS_957800-959278 104.3 1.6e-29 1
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001819_0816 1/1 290 351 .. 1 68 [. 104.3 1.6e-29
Alignments of top-scoring domains:
CP001819_0816: domain 1 of 1, from 290 to 351: score 104.3, E = 1.6e-29
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQar+ k +e+ +eaL+E+ +RV++
CP001819_0 290 EIHHRVKNNLQTVAALLRLQARRMKLPEA-----KEALEEAMRRVAT 331
mAliHEeLYksedldtvdfse<-*
+Al+H+ L+++ d + v+f++
CP001819_0 332 IALVHDSLSQTLD-EEVEFDD 351
Histogram of all scores:
score obs exp (one = represents 20 sequences)
----- --- ---
-15 4 0|=
-14 18 0|=
-13 56 23|=*=
-12 242 243|============*
-11 1167 678|=================================*=========================
-10 769 878|======================================= *
-9 524 741|=========================== *
-8 433 497|====================== *
-7 207 295|=========== *
-6 162 164|========*
-5 56 88|=== *
-4 24 46|==*
-3 27 24|=*
-2 7 12|*
-1 3 6|*
0 5 3|*
1 3 1|*
2 0 0|
3 0 0|
> 4 3 -|=
% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 536.3467
P(chi-square) = 0
Total sequences searched: 3710
Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K
