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Thermotogae
Classification of phyla is from NCBI page
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106 projects found  

2 accessions found for Xylanimonas cellulosilytica DSM 15894  

Data for CP001821  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001821.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001821_2904 CDS_3265001-3266623 76.5 2e-21 1
CP001821_2487 CDS_2743502-2741742 73.1 1.8e-20 1
CP001821_2460 CDS_2710542-2711585 67.6 6.8e-19 1
CP001821_2935 CDS_3300606-3299443 66.4 1.4e-18 1
CP001821_2571 CDS_2857089-2855752 56.9 7e-16 1
CP001821_1254 CDS_1375636-1376901 47.5 3.2e-13 1
CP001821_1415 CDS_1546574-1547752 47.1 4.3e-13 1
CP001821_2956 CDS_3321148-3321918 45.1 1.6e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001821_2904 1/1 294 361 .. 1 87 [] 76.5 2e-21
CP001821_2487 1/1 289 356 .. 1 87 [] 73.1 1.8e-20
CP001821_2460 1/1 114 178 .. 1 87 [] 67.6 6.8e-19
CP001821_2935 1/1 153 219 .. 1 87 [] 66.4 1.4e-18
CP001821_2571 1/1 207 272 .. 1 87 [] 56.9 7e-16
CP001821_1254 1/1 184 252 .. 1 87 [] 47.5 3.2e-13
CP001821_1415 1/1 152 216 .. 1 87 [] 47.1 4.3e-13
CP001821_2956 1/1 39 107 .. 1 87 [] 45.1 1.6e-12

Alignments of top-scoring domains:
CP001821_2904: domain 1 of 1, from 294 to 361: score 76.5, E = 2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++++sHELRTPL++Irgy el ++ ++l+ +++
CP001821_2 294 RMRRFISDASHELRTPLATIRGYGELYRM---------GALDTPDK- 330

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++++a+r+ L+ndlL l+r+++g
CP001821_2 331 ---------VDDTMGRVEDAARRMGLLVNDLLVLARLDEG 361

CP001821_2487: domain 1 of 1, from 289 to 356: score 73.1, E = 1.8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++++sHELRTPLt+Ir + el+ + +++el++
CP001821_2 289 SQRRFVSDVSHELRTPLTTIRIAGELIHA-------SRDELDPVA-- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ e+++ +++r ++L+ dlL++sr +ag
CP001821_2 327 ----------RRSAEVLQTQLDRFEELLGDLLEISRFDAG 356

CP001821_2460: domain 1 of 1, from 114 to 178: score 67.6, E = 6.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++an+sHELRTP++a+++ +e + +++ te ++ +
CP001821_2 114 TRRDLIANVSHELRTPVAALQAQLENMVDGV-------TEPTPAT-- 151

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le l ++erl rL+ lLdlsr eag
CP001821_2 152 -------------LELSLAQTERLTRLVTYLLDLSRVEAG 178

CP001821_2935: domain 1 of 1, from 153 to 219: score 66.4, E = 1.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ n+sHEL+TP+ aI ++ae+ + ++ ++ +
CP001821_2 153 IRRDFVVNVSHELKTPVGAIALLAETVAD---------AADDPVAV- 189

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++e+++rea+rl++L+ ++ +lsr++a
CP001821_2 190 ----------RRFTERMQREARRLSALVHEIIELSRLQAT 219

CP001821_2571: domain 1 of 1, from 207 to 272: score 56.9, E = 7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f++++sH+LRTPLta+ + +e +++ + ++++
CP001821_2 207 AERQFTSDASHQLRTPLTALTMRLEEIQA---------ASQDPDV-- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ l+++erl ++dlL sr +g
CP001821_2 243 ----------QEEARISLEQVERLVTVVDDLLAASRRSQG 272

CP001821_1254: domain 1 of 1, from 184 to 252: score 47.5, E = 3.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ +sH+L PL + +++lL +++ ++ l+e
CP001821_1 184 DLEQFAYVASHDLQEPLRKVASFTQLLGKRY------RGRLDENA-- 222

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ + + a+r++rLi+dlL +sr +
CP001821_1 223 ----------DQYIDFAVDGAKRMQRLIQDLLMFSRVGRA 252

CP001821_1415: domain 1 of 1, from 152 to 216: score 47.1, E = 4.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPL+ ++++e++++ d++++ +++
CP001821_1 152 EQRRFAANASHELRTPLAIAQTLVEVARN--------DPDRDVDEL- 189

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++++ r +L + lL l r+++g
CP001821_1 190 -------------LRRLHAVNARAIDLTEALLLLGRADQG 216

CP001821_2956: domain 1 of 1, from 39 to 107: score 45.1, E = 1.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + ++ l+HE+RTPL+ ++g+ elL e+ ++l++ q
CP001821_2 39 ERADRVSVLAHEIRTPLALVKGAGELLAERT------PGALNDIQ-- 77

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++eti + +e ++ +dlL+ +r+ea
CP001821_2 78 ----------STFVETITQNTEAVIAMAEDLLTEARLEAD 107


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-14 7 0|=
-13 38 2|*===
-12 141 76|======*=====
-11 307 395|========================== *
-10 571 733|================================================ *
-9 664 757|======================================================== *
-8 634 567|===============================================*=====
-7 391 357|=============================*===
-6 267 205|=================*=====
-5 137 112|=========*==
-4 77 60|====*==
-3 33 31|==*
-2 20 16|=*
-1 19 8|*=
0 10 4|*
1 5 2|*
2 3 1|*
3 2 0|=
> 4 11 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 174.0497
P(chi-square) = 1.729e-31

Total sequences searched: 3337

Whole sequence top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: