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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

2 accessions found for Xylanimonas cellulosilytica DSM 15894  

Data for CP001821  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001821.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001821_2582 CDS_2873024-2871546 92.0 4.4e-26 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001821_2582 1/1 290 355 .. 1 72 [. 92.0 4.4e-26

Alignments of top-scoring domains:
CP001821_2582: domain 1 of 1, from 290 to 355: score 92.0, E = 4.4e-26
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNL+++++LLrLQ+r+++ +e+ +eaL E+ +RV++
CP001821_2 290 EIHHRVKNNLATVAALLRLQSRRVQIPEA-----REALDEATRRVAT 331

mAliHEeLYksedldtvdfseYlek<-*
++l+HE L+++ d + v+++ l++
CP001821_2 332 ISLVHEFLSQTLD-EHVELDGMLQR 355


Histogram of all scores:
score obs exp (one = represents 18 sequences)
----- --- ---
-15 5 0|=
-14 23 0|==
-13 74 20|=*===
-12 215 219|============*
-11 1047 610|=================================*=========================
-10 735 789|========================================= *
-9 476 667|=========================== *
-8 384 447|====================== *
-7 143 265|======== *
-6 127 148|========*
-5 41 79|=== *
-4 24 42|==*
-3 22 22|=*
-2 9 11|*
-1 5 6|*
0 1 3|*
1 4 1|*
> 2 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 602.2181
P(chi-square) = 0

Total sequences searched: 3337

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: