Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
14 projects found  

2 accessions found for Sphaerobacter thermophilus DSM 20745  

Data for CP001823  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001823.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001823_0989 CDS_1097714-1099672 77.6 4e-22 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001823_0989 1/1 452 504 .. 1 58 [. 77.6 4e-22

Alignments of top-scoring domains:
CP001823_0989: domain 1 of 1, from 452 to 504: score 77.6, E = 4e-22
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+HHRV+NNLQ++++LL++Qar + de L+E+++R++S
CP001823_0 452 EMHHRVRNNLQMVAALLSMQARHAADEGW-----TQPLQEAVSRIRS 493

mAliHEeLYks<-*
+A iH+ L+ +
CP001823_0 494 IAAIHDLLSSG 504


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-15 5 0|=
-14 9 0|=
-13 35 15|=*=
-12 161 160|=============*
-11 683 446|=====================================*===================
-10 491 577|========================================= *
-9 360 487|============================== *
-8 320 327|===========================*
-7 139 194|============ *
-6 124 108|========*==
-5 48 58|====*
-4 25 30|==*
-3 24 16|=*
-2 3 8|*
-1 4 4|*
0 3 2|*
1 1 1|*
2 1 0|=
> 3 3 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 222.4577
P(chi-square) = 6.186e-312

Total sequences searched: 2439

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: