Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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14 projects found  

2 accessions found for Sphaerobacter thermophilus DSM 20745  

Data for CP001824  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001824.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001824_0598 CDS_717889-720699 69.2 7.3e-20 1
CP001824_0201 CDS_235429-233492 65.7 7.2e-19 1
CP001824_0230 CDS_272407-270401 62.7 5.3e-18 1
CP001824_0796 CDS_952003-953199 46.6 1.8e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001824_0598 1/1 701 771 .. 1 87 [] 69.2 7.3e-20
CP001824_0201 1/1 418 486 .. 1 87 [] 65.7 7.2e-19
CP001824_0230 1/1 421 491 .. 1 87 [] 62.7 5.3e-18
CP001824_0796 1/1 153 220 .. 1 87 [] 46.6 1.8e-13

Alignments of top-scoring domains:
CP001824_0598: domain 1 of 1, from 701 to 771: score 69.2, E = 7.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++efl+ +sHEL+TPLt+++g + lL +e+ + e ++ ++
CP001824_0 701 AREEFLSVASHELKTPLTTVKGWVYLLADEV------RREDPDREA- 740

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+re+++ ++++++r + Li dlLd sri++g
CP001824_0 741 ---------IREFTDELQSQIDRFEGLIADLLDASRIQQG 771

CP001824_0201: domain 1 of 1, from 418 to 486: score 65.7, E = 7.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fl+ +sHELRTP+t+I+g a lLl ++ ++l+ee+r
CP001824_0 418 LKDDFLSLVSHELRTPMTTIQGGALLLLQNG-------ADLDEETR- 456

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l i +e++rl L++++ +l+ i+ag
CP001824_0 457 ----------HEILTDIANESRRLAGLVENMVQLANIRAG 486

CP001824_0230: domain 1 of 1, from 421 to 491: score 62.7, E = 5.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++efl+ ++HELRTPLt+I+gy++lL ++l e+++ +l
CP001824_0 421 ARDEFLSVAAHELRTPLTSIKGYIQLLDRRLA------IEQPDIAAL 461

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r e+++ ++ r +r+++dlLd+sri+ g
CP001824_0 462 ----------RASMEKLRPQLARFERIVRDLLDISRIDRG 491

CP001824_0796: domain 1 of 1, from 153 to 220: score 46.6, E = 1.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++ +sHEL+TPL++Irg+a+ e ++ +++
CP001824_0 153 FVTALIRQVSHELKTPLSVIRGHASRFAE---------ADVTDPA-- 188

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e r++ ++++ea rl Li++ ++r e +
CP001824_0 189 --------EARRAWAVVDDEATRLTGLIDQAILMARFEMP 220


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 3 0|=
-13 5 0|==
-12 34 23|=====*===
-11 83 123|===================== *
-10 146 230|===================================== *
-9 197 237|================================================== *
-8 213 177|============================================*=========
-7 127 112|===========================*====
-6 98 64|===============*=========
-5 55 35|========*=====
-4 38 18|====*=====
-3 17 10|==*==
-2 16 5|=*==
-1 4 2|*
0 2 1|*
1 1 0|=
2 1 0|=
3 0 0|
4 1 0|=
> 5 5 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 138.7435
P(chi-square) = 7.623e-25

Total sequences searched: 1046

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: