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Firmicutes Fusobacteria Gammaproteobacteria
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Thermotogae
Classification of phyla is from NCBI page
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25 projects found  

2 accessions found for Thermobaculum terrenum ATCC BAA-798  

Data for CP001825  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001825.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001825_1089 CDS_1183368-1181935 99.8 2.9e-28 1
CP001825_1023 CDS_1104766-1102913 93.4 1.8e-26 1
CP001825_1428 CDS_1573095-1571635 87.9 6.4e-25 1
CP001825_1477 CDS_1622893-1621154 74.7 3.6e-21 1
CP001825_1064 CDS_1151905-1150841 70.2 7e-20 1
CP001825_0288 CDS_312365-311364 61.1 2.6e-17 1
CP001825_1482 CDS_1625797-1627569 59.9 5.8e-17 1
CP001825_1122 CDS_1225073-1227355 38.3 7.3e-11 1
CP001825_1021 CDS_1101118-1102542 30.7 1e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001825_1089 1/1 258 325 .. 1 87 [] 99.8 2.9e-28
CP001825_1023 1/1 391 459 .. 1 87 [] 93.4 1.8e-26
CP001825_1428 1/1 243 309 .. 1 87 [] 87.9 6.4e-25
CP001825_1477 1/1 353 422 .. 1 87 [] 74.7 3.6e-21
CP001825_1064 1/1 124 192 .. 1 87 [] 70.2 7e-20
CP001825_0288 1/1 112 182 .. 1 87 [] 61.1 2.6e-17
CP001825_1482 1/1 358 426 .. 1 87 [] 59.9 5.8e-17
CP001825_1122 1/1 538 603 .. 1 87 [] 38.3 7.3e-11
CP001825_1021 1/1 231 295 .. 1 87 [] 30.7 1e-08

Alignments of top-scoring domains:
CP001825_1089: domain 1 of 1, from 258 to 325: score 99.8, E = 2.9e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a++sHELRTPLt+I+g+a lLl+ +++s+e+r
CP001825_1 258 AERRFVADASHELRTPLTTILGNAGLLLK--------VPNMSPEDR- 295

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e le i++ea+r++rL++dlL+l+r++ag
CP001825_1 296 ----------QESLEQIYEEADRMRRLVSDLLTLARADAG 325

CP001825_1023: domain 1 of 1, from 391 to 459: score 93.4, E = 1.8e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks f++++sHELRTPL++++g+a ++l ++ ++ls+ q
CP001825_1 391 AKSNFISMVSHELRTPLNSVLGFANVILSGAT------GPLSDRQ-- 429

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+le i+ ++++l +L++d+Ldlsr++ag
CP001825_1 430 ----------REFLEYIQASSRHLVQLVSDILDLSRMDAG 459

CP001825_1428: domain 1 of 1, from 243 to 309: score 87.9, E = 6.4e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+a++sHELRTPLt+Irg+ae++l+ d++l+++
CP001825_1 243 SQKRFVADASHELRTPLTTIRGNAEVMLM--------DPNLPPDV-- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re le i+ e+ rl+rL+++lL l+r++ag
CP001825_1 280 ----------REGLENIRGEVSRLSRLVSNLLMLARADAG 309

CP001825_1477: domain 1 of 1, from 353 to 422: score 74.7, E = 3.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s++l ++sHELRTP++aI+g+a+ L+ a + e + e +
CP001825_1 353 LRSQLLGTVSHELRTPIAAIQGFASSLKC------ADEVEIPKEMQ- 392

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ i++ aerl+rL+ dlLdlsr+e+g
CP001825_1 393 ----------QDWINEIEQNAERLRRLVTDLLDLSRLESG 422

CP001825_1064: domain 1 of 1, from 124 to 192: score 70.2, E = 7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fl+n+ HELRTPLta+ +++e++l ++ + + ++
CP001825_1 124 AKNDFLSNVTHELRTPLTALVATTEVMLQDY-------KDIPQSEL- 162

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++r ++rl++L+++lLd + i++g
CP001825_1 163 ----------GSMINLLHRNTRRLESLVSNLLDVAAIQNG 192

CP001825_0288: domain 1 of 1, from 112 to 182: score 61.1, E = 2.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + l+ ++HEL+TPLtaI+g ++lL++ +l++ ++ls+ +
CP001825_0 112 ENIDYLSIAAHELKTPLTAIKGGTQLLER----TLLRNGDLSDRE-- 152

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l i+++++rl+ +++ lLd sr+ +g
CP001825_0 153 ----------SKLLGMIISQVNRLSYMVDSLLDTSRLASG 182

CP001825_1482: domain 1 of 1, from 358 to 426: score 59.9, E = 5.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e l+ +sH+LRTPL++++g++++L++ l +++ e +
CP001825_1 358 AREEYLSLISHDLRTPLSVVIGHSQILKTLL------REKGLERE-- 396

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ i+ +++l r++++lLd + +eag
CP001825_1 397 ----------ERNVDAIIGGGRQLTRMVENLLDRASLEAG 426

CP001825_1122: domain 1 of 1, from 538 to 603: score 38.3, E = 7.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f a+++HEL+ P++aIr+ +++++ ++ + +
CP001825_1 538 MRADFSAMIAHELNSPIAAIRAVLDVIEQ---------ANSNMRH-- 573

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l++i+re++ l +L d+ s e
CP001825_1 574 ----------KNLLNVIKREVDVLASLAGDVYNASEYEKS 603

CP001825_1021: domain 1 of 1, from 231 to 295: score 30.7, E = 1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+l+ + HE+RTP+++Irg ael+++ ++ + +
CP001825_1 231 AREEMLRIADHEIRTPVSVIRGCAELIKK-------DREFIPLKV-- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + ++aer+ +L+ ++ + +g
CP001825_1 269 ----------MHHVDLMTSQAERIVDLLHRI---AHGSTG 295


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 1 0|=
-14 4 0|=
-13 24 1|*===
-12 71 42|=====*=====
-11 173 220|========================= *
-10 294 408|========================================== *
-9 361 422|==================================================== *
-8 323 316|=============================================*=
-7 239 199|============================*======
-6 148 114|================*=====
-5 84 62|========*===
-4 58 33|====*====
-3 26 17|==*=
-2 17 9|=*=
-1 10 4|*=
0 5 2|*
1 2 1|*
2 2 0|=
3 2 0|=
4 2 0|=
> 5 13 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 123.0415
P(chi-square) = 1.22e-21

Total sequences searched: 1859

Whole sequence top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: