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Firmicutes Fusobacteria Gammaproteobacteria
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Thermotogae
Classification of phyla is from NCBI page
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25 projects found  

2 accessions found for Thermobaculum terrenum ATCC BAA-798  

Data for CP001826  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001826.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001826_0311 CDS_340489-336398 113.3 2.2e-32 1
CP001826_0968 CDS_1067338-1069119 86.2 1e-24 1
CP001826_0488 CDS_527584-525455 83.6 5.6e-24 1
CP001826_0186 CDS_197709-199199 79.3 9.7e-23 1
CP001826_0215 CDS_226566-224947 79.2 9.9e-23 1
CP001826_0485 CDS_520095-523610 69.3 6.4e-20 1
CP001826_0240 CDS_259693-258431 64.1 1.9e-18 1
CP001826_0669 CDS_733535-735166 59.7 3.3e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001826_0311 1/1 843 908 .. 1 87 [] 113.3 2.2e-32
CP001826_0968 1/1 367 434 .. 1 87 [] 86.2 1e-24
CP001826_0488 1/1 481 546 .. 1 87 [] 83.6 5.6e-24
CP001826_0186 1/1 273 339 .. 1 87 [] 79.3 9.7e-23
CP001826_0215 1/1 309 377 .. 1 87 [] 79.2 9.9e-23
CP001826_0485 1/1 938 1009 .. 1 87 [] 69.3 6.4e-20
CP001826_0240 1/1 188 256 .. 1 87 [] 64.1 1.9e-18
CP001826_0669 1/1 312 383 .. 1 87 [] 59.7 3.3e-17

Alignments of top-scoring domains:
CP001826_0311: domain 1 of 1, from 843 to 908: score 113.3, E = 2.2e-32
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksef+an+sHE+RTPL+aI+g++elL++ t+lse q
CP001826_0 843 LKSEFVANMSHEIRTPLNAIIGMTELLQD---------TPLSERQ-- 878

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+++ti+ ++++ll++ind+Ld+s+ieag
CP001826_0 879 ----------REFVQTIQTSSQSLLSIINDILDFSKIEAG 908

CP001826_0968: domain 1 of 1, from 367 to 434: score 86.2, E = 1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+an+sHELRTP++a++ ++e+L+e ++l +e+++
CP001826_0 367 IRQEFVANVSHELRTPVAALKSLVETLEE---------GALEDEEVA 404

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l +++ e++ l +Li++lL+lsrie+g
CP001826_0 405 ----------RDFLARMHVEVDKLAQLIEELLELSRIESG 434

CP001826_0488: domain 1 of 1, from 481 to 546: score 83.6, E = 5.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sHEL+TP+t ++gya++L + +
CP001826_0 481 LRNQFIATASHELKTPITLLKGYAQVLMD---------RSREGVL-- 516

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ le+i r+++r+++LindlLd s+ieag
CP001826_0 517 ----------RRPLEIINRQVDRMSELINDLLDVSKIEAG 546

CP001826_0186: domain 1 of 1, from 273 to 339: score 79.3, E = 9.7e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks +l+++sHELRTPL++Ir++a +le +++++
CP001826_0 273 MKSALLSSMSHELRTPLSVIRAAAGGMLE-------------APEMP 306

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p+L re+ +i+rea rl+rL+ +lLd+srieag
CP001826_0 307 PAL-------RELALSIDREASRLDRLVGNLLDMSRIEAG 339

CP001826_0215: domain 1 of 1, from 309 to 377: score 79.2, E = 9.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ ++ ++sH+LRTPL++I+++a+ Ll+ +d e+see+r
CP001826_0 309 LKTSLINAVSHDLRTPLATISAAADSLLR-------QDVEWSEEER- 347

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ i +e++rl rL+++lLd+sr+e g
CP001826_0 348 ----------RGFVRDIAEESRRLGRLVDNLLDMSRLEGG 377

CP001826_0485: domain 1 of 1, from 938 to 1009: score 69.3, E = 6.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++sefla++sH+L++PL +++g+a+lL+++l+ ++++ + qrl
CP001826_0 938 MRSEFLAMVSHDLKNPLVSVKGMAQLLRRQLE-----RGDCLDVQRL 979

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ l++i++ a r++++in+lLd +r++ g
CP001826_0 980 IEG----------LDKIDSVATRMSAQINELLDTARLQMG 1009

CP001826_0240: domain 1 of 1, from 188 to 256: score 64.1, E = 1.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+sefl++lsH+LRTPLt+ r+ + +L++ + + l e++
CP001826_0 188 VRSEFLSSLSHDLRTPLTSARAGIGMLQASAQ------DRLREDE-- 226

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l + +r+++rl+ +i+dlL+ls+ieag
CP001826_0 227 ----------TDLLASSKRSLDRLELMIDDLLTLSQIEAG 256

CP001826_0669: domain 1 of 1, from 312 to 383: score 59.7, E = 3.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++fla++ H+L+TPL++ +y+++L+ +l + s +
CP001826_0 312 TRNDFLAMITHDLKTPLATAGTYLQALRLQL--------TTSGRD-- 348

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
edp+ + +l ++r ++++ +++++lLd++r+++g
CP001826_0 349 -----EDPGLKAILGNMERTIHQMADQVQELLDIARLQSG 383


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 3 0|=
-13 15 0|====
-12 47 22|=====*======
-11 99 115|========================= *
-10 139 213|=================================== *
-9 186 220|=============================================== *
-8 151 165|====================================== *
-7 128 104|=========================*======
-6 81 60|==============*======
-5 44 32|=======*===
-4 32 17|====*===
-3 15 9|==*=
-2 7 4|*=
-1 6 2|*=
0 5 1|*=
1 5 0|==
> 2 10 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 94.6609
P(chi-square) = 1.882e-16

Total sequences searched: 973

Whole sequence top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: