Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
14 projects found  

1 accessions found for Dehalococcoides sp. VS  

Data for CP001827  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001827.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001827_1314 CDS_1291283-1294561 75.6 1.6e-21 1
CP001827_0947 CDS_947654-946308 72.9 9.1e-21 1
CP001827_0534 CDS_535291-532733 71.9 1.7e-20 1
CP001827_0126 CDS_139180-135992 70.0 5.9e-20 1
CP001827_0136 CDS_145280-147025 70.0 5.9e-20 1
CP001827_1323 CDS_1302166-1306305 67.3 3.6e-19 1
CP001827_1330 CDS_1310320-1312533 65.8 9.2e-19 1
CP001827_0830 CDS_824529-820753 64.7 1.9e-18 1
CP001827_0865 CDS_858428-859840 63.3 4.7e-18 1
CP001827_1012 CDS_1001944-1000757 60.9 2.3e-17 1
CP001827_1349 CDS_1333805-1334983 53.1 3.8e-15 1
CP001827_0076 CDS_75451-78705 52.9 4.2e-15 1
CP001827_1230 CDS_1210622-1209090 52.7 4.8e-15 1
CP001827_0085 CDS_86454-88733 49.4 4.1e-14 1
CP001827_0097 CDS_99210-102422 41.1 9.1e-12 1
CP001827_1249 CDS_1232280-1228924 40.2 1.7e-11 1
CP001827_1313 CDS_1291065-1289461 37.9 7.5e-11 1
CP001827_0158 CDS_166230-164461 37.3 1.1e-10 1
CP001827_1272 CDS_1253297-1254577 35.3 4.1e-10 1
CP001827_1239 CDS_1219569-1220702 33.5 1.3e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001827_1314 1/1 731 797 .. 1 87 [] 75.6 1.6e-21
CP001827_0947 1/1 228 294 .. 1 87 [] 72.9 9.1e-21
CP001827_0534 1/1 632 697 .. 1 87 [] 71.9 1.7e-20
CP001827_0126 1/1 830 895 .. 1 87 [] 70.0 5.9e-20
CP001827_0136 1/1 359 426 .. 1 87 [] 70.0 5.9e-20
CP001827_1323 1/1 1013 1079 .. 1 87 [] 67.3 3.6e-19
CP001827_1330 1/1 374 440 .. 1 87 [] 65.8 9.2e-19
CP001827_0830 1/1 901 967 .. 1 87 [] 64.7 1.9e-18
CP001827_0865 1/1 246 310 .. 1 87 [] 63.3 4.7e-18
CP001827_1012 1/1 143 208 .. 1 87 [] 60.9 2.3e-17
CP001827_1349 1/1 168 233 .. 1 87 [] 53.1 3.8e-15
CP001827_0076 1/1 860 926 .. 1 87 [] 52.9 4.2e-15
CP001827_1230 1/1 289 354 .. 1 87 [] 52.7 4.8e-15
CP001827_0085 1/1 550 615 .. 1 87 [] 49.4 4.1e-14
CP001827_0097 1/1 847 912 .. 1 87 [] 41.1 9.1e-12
CP001827_1249 1/1 888 953 .. 1 87 [] 40.2 1.7e-11
CP001827_1313 1/1 302 367 .. 1 87 [] 37.9 7.5e-11
CP001827_0158 1/1 357 423 .. 1 87 [] 37.3 1.1e-10
CP001827_1272 1/1 198 259 .. 1 83 [. 35.3 4.1e-10
CP001827_1239 1/1 148 213 .. 1 87 [] 33.5 1.3e-09

Alignments of top-scoring domains:
CP001827_1314: domain 1 of 1, from 731 to 797: score 75.6, E = 1.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++a+++HE+++PLt+++g++elLle + +l+++
CP001827_1 731 AVGEMAAGIAHEINNPLTGVIGFSELLLE--------RKDLPDDV-- 767

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++i + ++r +++i ++L+++r ++
CP001827_1 768 ----------KDNLQIINEGSQRAREIIKRMLTFARQSTP 797

CP001827_0947: domain 1 of 1, from 228 to 294: score 72.9, E = 9.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f++++sH+L+ PLt+Ir+ +el+l+ e+++e+
CP001827_0 228 SQHRFTSDASHDLKAPLTVIRAESELALR---------KERNSEE-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr++++ i +++er+ +i+dl++l+ ++ag
CP001827_0 264 ---------YRQAFKNIVKQVERMTLIIDDLMTLASLDAG 294

CP001827_0534: domain 1 of 1, from 632 to 697: score 71.9, E = 1.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +e++a+l+HEL++PLt+++g++el++e +l+e+
CP001827_0 632 SVGEMAAGLAHELNNPLTSVLGFSELIQE---------KDLPEDL-- 667

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++i +ea+r ++i++lL+++r ++
CP001827_0 668 ----------MHDVQIISQEAQRAADIIRNLLTFARRHEQ 697

CP001827_0126: domain 1 of 1, from 830 to 895: score 70.0, E = 5.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +e++++l+HE+++PLt+I g++elLl+ el e
CP001827_0 830 SVGELASGLAHEINNPLTGIVGFSELLLM---------NELEESI-- 865

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ti+rea r + +++lL+++r + +
CP001827_0 866 ----------KEDVQTIHREALRAAEVVRNLLTFARQQPP 895

CP001827_0136: domain 1 of 1, from 359 to 426: score 70.0, E = 5.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTP++++++++e+L+e +++s++ ++
CP001827_0 359 VRRDFVANISHELRTPISSLKLLTETLQE---------GAASDPAVA 396

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++i+ e++ l +L+ +l dls ie+g
CP001827_0 397 ----------AGFIDKIHLEVDKLAQLVTELSDLSAIESG 426

CP001827_1323: domain 1 of 1, from 1013 to 1079: score 67.3, E = 3.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++a+++HE+++PLt++ g+aelL + +++l+ +
CP001827_1 1013 AVGEMAAGIAHEINNPLTGVVGFAELLSN--------RPDLPVDV-- 1049

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++i + + r +++ +lL+++r +
CP001827_1 1050 ----------QDSLKVINNGSLRVVEIVKRLLTFARQTKP 1079

CP001827_1330: domain 1 of 1, from 374 to 440: score 65.8, E = 9.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++a+++HE+++PLt+++g++elL + +++l+ +
CP001827_1 374 AIGEMAAGIAHEINNPLTGVIGFSELLAT--------REDLPKDV-- 410

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i + ++r +++++lL+++r +
CP001827_1 411 ----------MADLQVINHGSQRVVEIVRRLLTFARQNKP 440

CP001827_0830: domain 1 of 1, from 901 to 967: score 64.7, E = 1.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++a+++HE+++PLt+++g+a++L e +++l+ +
CP001827_0 901 AVGEMAAGIAHEINNPLTGVIGFASILME--------REDLPRDV-- 937

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l++i + ++r +++ ++L+++r +
CP001827_0 938 ----------MEQLQIINSGSQRVVDIVKRMLTFARQAKP 967

CP001827_0865: domain 1 of 1, from 246 to 310: score 63.3, E = 4.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++la+++HELRTPLt+I g+++ +l+ + +++
CP001827_0 246 SRQRLLADIAHELRTPLTVIEGTVDGILD---------GVFEADT-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l ti++e+ l rLi dl+d+s +e+g
CP001827_0 282 -----------RHLTTIKEESATLTRLIKDLRDISLAESG 310

CP001827_1012: domain 1 of 1, from 143 to 208: score 60.9, E = 2.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a+++HE++ PLt+I+g++e L + seeq
CP001827_1 143 SVGALTAGVAHEINSPLTSILGFSERLAR---------KCTSEEQ-- 178

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e+i+ ea r + +++l++++r ++
CP001827_1 179 ----------HRDIERIHTEALRAAKVVDNLRTFARSYEQ 208

CP001827_1349: domain 1 of 1, from 168 to 233: score 53.1, E = 3.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+++l HEL+TPLt++++++elL + +l ee +
CP001827_1 168 QRVTFMRALVHELKTPLTSMLATSELLSK----------NLKEEPN- 203

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y++ ++ ++ l+ +++lLd++r e g
CP001827_1 204 ----------HSYIKCLYAGIQDLNLRVDELLDIARGEVG 233

CP001827_0076: domain 1 of 1, from 860 to 926: score 52.9, E = 4.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++ +l HELRTPLt I+g +e+Lle +l + rl
CP001827_0 860 RRKALINSLVHELRTPLTPIIGSSEILLE----------KLEGDARL 896

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i ++ae++++ i+dl d ++ e g
CP001827_0 897 ----------YRVAKNISSAAESMNQRIRDLVDSAKSEIG 926

CP001827_1230: domain 1 of 1, from 289 to 354: score 52.7, E = 4.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+++l HEL+TPLtaI+ +e L++ + e++
CP001827_1 289 RREYFTRALVHELKTPLTAIISSSEGLQN----------DIKRETA- 324

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + i++ a l+r i++lLd+++ e g
CP001827_1 325 ----------KKFAKNIQDGASTLNRRIDELLDITKGEIG 354

CP001827_0085: domain 1 of 1, from 550 to 615: score 49.4, E = 4.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef ++l HEL+TPLt I+g++ +L + + +ee
CP001827_0 550 QRIEFSRALVHELKTPLTPILGASAILAK----------NFTEEP-- 584

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i++ a+ l++ +++lLd +r e g
CP001827_0 585 ---------WHSVALNIENGAQNLNKRVDELLDVARGEIG 615

CP001827_0097: domain 1 of 1, from 847 to 912: score 41.1, E = 9.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+++l HEL+TPLt+++ +el e+++e
CP001827_0 847 NRAKFTRALVHELKTPLTSLSISSELFAG----------EATDEP-- 881

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++i+r++ l++ +++Ldl+r e+g
CP001827_0 882 ---------FISLSRSIERSVMNLSKRCDEMLDLARGETG 912

CP001827_1249: domain 1 of 1, from 888 to 953: score 40.2, E = 1.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ef +l HEL+TPLt I+ +++++ + ++s++ +
CP001827_1 888 KRIEFNHALTHELKTPLTPIIVTSQMMID----------HASDDFI- 923

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ + + ++a+ l + +++lLdl+r e g
CP001827_1 924 ----------LEAARNVFDSANNLCNRVDELLDLARSEIG 953

CP001827_1313: domain 1 of 1, from 302 to 367: score 37.9, E = 7.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+++l HEL+TPLt +++ +e L els +
CP001827_1 302 QRNYFMRALVHELKTPLTPLLASSEYLVS----------ELSGSAL- 337

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y + +++ a l++ i+dl+ l++ e g
CP001827_1 338 ----------LGYARNMQNGAINLNNKIDDLMNLAKGEIG 367

CP001827_0158: domain 1 of 1, from 357 to 423: score 37.3, E = 1.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l +l HE+RTPLt +++++++L + +e++ e
CP001827_0 357 KRQAHLKALVHEIRTPLTPLLAASDALVN--------VSEKGTEL-- 393

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++i++ ae l++ i dl +l+r g
CP001827_0 394 ----------YNLASSIREGAETLNSRIHDLIELERGKIG 423

CP001827_1272: domain 1 of 1, from 198 to 259: score 35.3, E = 4.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef++ + H+L+TPLt+I+ + +L + + + +
CP001827_1 198 SRLEFTRIVVHDLKTPLTSIISSSGVLSN----------IAADVK-- 232

peLRledpeyreyletilreaerllrLindlLdlsr<-*
y+ + + i++++ l+ +++lLd+++
CP001827_1 233 ---------YKALASNIYESTMNLNTRLDELLDMAQ 259

CP001827_1239: domain 1 of 1, from 148 to 213: score 33.5, E = 1.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks ++ + HEL+TP+ta+++++el + +++ e
CP001827_1 148 EKSNYIRLIVHELKTPITALLAAVELSKQ----------NQGCELP- 183

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ i++++ l++ ++dl l++ + +
CP001827_1 184 ----------ELSLDNIYDSVIALDKRVDDLSNLAKSQMN 213


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-15 2 0|=
-14 7 0|==
-13 30 1|*=====
-12 98 32|======*=============
-11 160 170|================================ *
-10 246 316|================================================== *
-9 246 326|================================================== *
-8 250 244|================================================*=
-7 146 154|==============================*
-6 96 88|=================*==
-5 70 48|=========*====
-4 23 26|=====*
-3 22 13|==*==
-2 10 7|=*
-1 8 3|*=
0 2 1|*
1 1 1|*
> 2 21 -|=====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 182.0916
P(chi-square) = 8.618e-34

Total sequences searched: 1438

Whole sequence top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: