Acidobacteria Actinobacteria Alphaproteobacteria
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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Dickeya dadantii Ech586  

Data for CP001836  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001836.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001836_3265 CDS_3794769-3797537 93.3 4.4e-26 1
CP001836_0978 CDS_1099297-1100619 87.8 1.6e-24 1
CP001836_1068 CDS_1205526-1208414 83.7 2.2e-23 1
CP001836_0638 CDS_718355-716883 82.7 4.3e-23 1
CP001836_0310 CDS_355269-357608 75.9 3.6e-21 1
CP001836_2587 CDS_2978101-2979489 73.4 1.9e-20 1
CP001836_3930 CDS_4568264-4569634 68.5 4.5e-19 2
CP001836_3028 CDS_3517419-3515986 66.3 2e-18 1
CP001836_0224 CDS_261014-262447 64.8 5.3e-18 1
CP001836_4054 CDS_4716547-4717596 60.1 1.1e-16 1
CP001836_0801 CDS_898306-899727 60.0 1.2e-16 1
CP001836_2943 CDS_3393944-3395302 56.2 1.4e-15 1
CP001836_1157 CDS_1306628-1303899 54.0 5.7e-15 1
CP001836_3747 CDS_4350159-4348747 53.7 7.2e-15 1
CP001836_1718 CDS_1990820-1989465 46.4 8.6e-13 1
CP001836_2718 CDS_3133190-3131799 45.8 1.3e-12 1
CP001836_0854 CDS_954389-955558 41.5 2e-11 1
CP001836_3682 CDS_4278608-4279738 41.0 2.9e-11 1
CP001836_1322 CDS_1499394-1498324 40.4 4.2e-11 1
CP001836_1309 CDS_1485174-1486250 38.6 1.4e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001836_3265 1/1 289 354 .. 1 87 [] 93.3 4.4e-26
CP001836_0978 1/1 203 269 .. 1 87 [] 87.8 1.6e-24
CP001836_1068 1/1 480 545 .. 1 87 [] 83.7 2.2e-23
CP001836_0638 1/1 268 336 .. 1 87 [] 82.7 4.3e-23
CP001836_0310 1/1 282 347 .. 1 87 [] 75.9 3.6e-21
CP001836_2587 1/1 237 303 .. 1 87 [] 73.4 1.9e-20
CP001836_3028 1/1 252 320 .. 1 87 [] 66.3 2e-18
CP001836_3930 1/2 238 300 .. 1 87 [] 65.7 2.9e-18
CP001836_0224 1/1 249 315 .. 1 87 [] 64.8 5.3e-18
CP001836_4054 1/1 129 186 .. 1 79 [. 60.1 1.1e-16
CP001836_0801 1/1 249 312 .. 1 87 [] 60.0 1.2e-16
CP001836_2943 1/1 230 294 .. 1 87 [] 56.2 1.4e-15
CP001836_1157 1/1 672 739 .. 1 87 [] 54.0 5.7e-15
CP001836_3747 1/1 233 293 .. 1 87 [] 53.7 7.2e-15
CP001836_1718 1/1 211 271 .. 1 87 [] 46.4 8.6e-13
CP001836_2718 1/1 244 309 .. 1 87 [] 45.8 1.3e-12
CP001836_0854 1/1 176 233 .. 8 87 .] 41.5 2e-11
CP001836_3682 1/1 148 208 .. 1 87 [] 41.0 2.9e-11
CP001836_1322 1/1 128 198 .. 1 87 [] 40.4 4.2e-11
CP001836_1309 1/1 136 200 .. 1 87 [] 38.6 1.4e-10

Alignments of top-scoring domains:
CP001836_3265: domain 1 of 1, from 289 to 354: score 93.3, E = 4.4e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l+ t l+ q
CP001836_3 289 IKSEFLANMSHELRTPLNGVIGFTRQTLK---------TQLTTTQ-- 324

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+r+a+ ll++ind+Ld+s++eag
CP001836_3 325 ----------KDYLQTIERSANNLLNIINDVLDFSKLEAG 354

CP001836_0978: domain 1 of 1, from 203 to 269: score 87.8, E = 1.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e++ + + l+ +
CP001836_0 203 ARRNFFANVSHELRTPLTVLQGYLEMMND---------ESLDGALQ- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+t++++++r++ L+++lL+lsriea
CP001836_0 240 ----------AKVLHTMQEQTRRMDGLVRQLLTLSRIEAA 269

CP001836_1068: domain 1 of 1, from 480 to 545: score 83.7, E = 2.2e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ l+++
CP001836_1 480 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KSLPSDA-- 515

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e +++++ ll++i+d+Ld+s+ie++
CP001836_1 516 ----------NRLVEAMQNSSALLLKIISDILDFSKIESE 545

CP001836_0638: domain 1 of 1, from 268 to 336: score 82.7, E = 4.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+an+sH+LRTPLt+++gy+e+L +++ ++ls+e++
CP001836_0 268 QRREFIANISHDLRTPLTSLLGYLETLSMKA-------ETLSPEDN- 306

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl ++lr+++ ++L ++l +l+++e+g
CP001836_0 307 ----------RQYLAIALRQGHKVRHLSQQLFELAKLEHG 336

CP001836_0310: domain 1 of 1, from 282 to 347: score 75.9, E = 3.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ f++++sHELRTPL++I g++ +Ll+ t+l++eq
CP001836_0 282 EKTTFISTISHELRTPLNGIVGLSRILLD---------THLDAEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a l ++ nd+ ++ + e
CP001836_0 318 ----------QKYLKTIHVSAITLGNIFNDIIEMDKQERR 347

CP001836_2587: domain 1 of 1, from 237 to 303: score 73.4, E = 1.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELRTPLt ++g ++l l e+++ +
CP001836_2 237 QLESFNADVAHELRTPLTNLIGQTQLGLS---------RERTSRE-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++l++ l+e+er+ +++nd+L ls ++ag
CP001836_2 273 ---------WEDLLQSNLEELERMTSIVNDMLFLSHAQAG 303

CP001836_3028: domain 1 of 1, from 252 to 320: score 66.3, E = 2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ efl++lsHEL+TPL+++r a lL +e+ ++l+++q
CP001836_3 252 QRHEFLRHLSHELKTPLASLREGAALLADEV------VGTLTDDQ-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + ++++++++l++Li++lLd+ r a
CP001836_3 291 ----------KEVVAILDNSSRHLQQLIEQLLDYNRKLAD 320

CP001836_3930: domain 1 of 2, from 238 to 300: score 65.7, E = 2.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l+++sHELRTPLt +++++ lL++++ +e +e
CP001836_3 238 AQQRLLSDISHELRTPLTRLQLATALLRRRQ-------GEGNE---- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i+ e++rl+ +indlL lsr ++
CP001836_3 274 -------------LNRIETETQRLDGMINDLLVLSRNQHK 300

CP001836_0224: domain 1 of 1, from 249 to 315: score 64.8, E = 5.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f a+l+HE+RTP+ a++g+++++l +++s e+
CP001836_0 249 RLTQFSADLAHEIRTPIGALMGHCQVALY---------QPRSVEE-- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +l+ + e+erl+r+++++L l+r+ ++
CP001836_0 285 ---------YETLLSDNIAELERLSRMVENILFLARASHE 315

CP001836_4054: domain 1 of 1, from 129 to 186: score 60.1, E = 1.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CP001836_4 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSK----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
CP001836_4 165 ----------MEYTKVIIEQADRLRNLVDRLL 186

CP001836_0801: domain 1 of 1, from 249 to 312: score 60.0, E = 1.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l ++sHELR PL+ +++++ l++ +++ +
CP001836_0 249 AREQLLHDVSHELRSPLARLQLAIGLARQ------------NPDNV- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l++i+reaer++++i ++L+lsr+e+
CP001836_0 283 ----------ENALQRIEREAERMDKMIGEVLTLSRAENH 312

CP001836_2943: domain 1 of 1, from 230 to 294: score 56.2, E = 1.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a++sHELRTPL+++rg +e+L++++ ++
CP001836_2 230 SRRAFMADVSHELRTPLAVLRGELEALQDGV-------RRPDSAA-- 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ e+ l +L++dl +ls + g
CP001836_2 268 -------------FSSLQAEVALLTKLVDDLHQLSLSDLG 294

CP001836_1157: domain 1 of 1, from 672 to 739: score 54.0, E = 5.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l +e s+
CP001836_1 672 LRNSLLAALSHDLRTPLTVLFGQAEILTLNLA------SEGSP---- 708

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ + i++ + + rL+n+lLd++ri++
CP001836_1 709 ---------YAPQASQIRQHILSTTRLVNNLLDMARIQSD 739

CP001836_3747: domain 1 of 1, from 233 to 293: score 53.7, E = 7.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e+
CP001836_3 233 DRTLLMAGVSHDLRTPLTRIRLATEMMGQ--------------ED-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e+i +++e ++++i+++ d+ r +++
CP001836_3 264 ----------EYLAESINKDIEECNAIIEQFIDYLRTGQE 293

CP001836_1718: domain 1 of 1, from 211 to 271: score 46.4, E = 8.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ n++HELRTPL +r + + + l+++++
CP001836_1 211 SKKQLIDNIAHELRTPLVRLRYRLAMSDN-----------LTDDEQ- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e i r++ +l++Li++lL+++r++ +
CP001836_1 246 --------------EAINRDVGQLEALIDELLTYARLDRP 271

CP001836_2718: domain 1 of 1, from 244 to 309: score 45.8, E = 1.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f a+++H+LRTPL+++++ + ++l+ + q
CP001836_2 244 RQERFGADAAHQLRTPLAVLKTQVGVALN----------SPQPAQ-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r+ l ++ ++ +L ++lL+lsr++a+
CP001836_2 279 ---------WRDSLTGMRATLDDTIQLTDRLLQLSRLRAQ 309

CP001836_0854: domain 1 of 1, from 176 to 233: score 41.5, E = 2e-11
*->nlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLRled
+++HELR PLta +g ++ +l+ + ++++
CP001836_0 176 AMAHELRSPLTAAMGRLQGMLD---------GVFPPDT--------- 204

peyreyletilreaerllrLindlLdlsrieag<-*
+ l+ + ++ l+rLi+dl ls + ag
CP001836_0 205 ----RQLQMVMNQMLNLNRLIEDLHLLSMASAG 233

CP001836_3682: domain 1 of 1, from 148 to 208: score 41.0, E = 2.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f++n++HELRTPL++Ir+ +el + ++ + +
CP001836_3 148 RDRLFASNVAHELRTPLAGIRLSLELHEQ--------LHHIDCQP-- 184

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++l + i++lL l+r ++
CP001836_3 185 ----------------LIKRIDHLTKTIEQLLLLARTSNE 208

CP001836_1322: domain 1 of 1, from 128 to 198: score 40.4, E = 4.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a+++HE ++PL++I + e++l++l+ + + + r+
CP001836_1 128 LMGELTASIAHEVNQPLASIVTSGEACLRWLN------ASPPNQARA 168

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++i+++a r +++i +++ ++ +
CP001836_1 169 ----------ELAVQRIINDATRASEIIARIRGFASRTPP 198

CP001836_1309: domain 1 of 1, from 136 to 200: score 38.6, E = 1.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + a+++HELRTP+t +rg ++ L e + ++
CP001836_1 136 ERAFWNAAIAHELRTPVTILRGRLQGLTE---------GVFEPDI-- 171

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +l ++e l rLi+dl+ +e+g
CP001836_1 172 -----------GLFRNLLTQVEGLGRLIEDLRVVGLAESG 200


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-14 12 0|=
-13 46 3|*===
-12 158 94|======*=====
-11 374 491|=========================== *
-10 661 911|================================================ *
-9 777 941|======================================================== *
-8 704 704|==================================================*
-7 540 444|===============================*=======
-6 335 255|==================*=====
-5 201 140|=========*=====
-4 138 75|=====*====
-3 79 39|==*===
-2 32 20|=*=
-1 26 10|*=
0 12 5|*
1 10 2|*
2 6 1|*
3 5 0|=
4 1 0|=
5 0 0|
6 0 0|
7 1 0|=
> 8 26 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 365.5848
P(chi-square) = 0

Total sequences searched: 4144

Whole sequence top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: