Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
11 projects found  

1 accessions found for Thermotoga naphthophila RKU-10  

Data for CP001839  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001839.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001839_1129 CDS_1179466-1180704 96.5 2.3e-27 1
CP001839_0073 CDS_67288-65810 87.3 9.1e-25 1
CP001839_1417 CDS_1439938-1437671 60.0 4.9e-17 1
CP001839_0188 CDS_187772-188989 55.8 7.8e-16 1
CP001839_1503 CDS_1523742-1524701 41.6 8.5e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001839_1129 1/1 185 252 .. 1 87 [] 96.5 2.3e-27
CP001839_0073 1/1 253 321 .. 1 87 [] 87.3 9.1e-25
CP001839_1417 1/1 537 603 .. 1 87 [] 60.0 4.9e-17
CP001839_0188 1/1 192 258 .. 1 87 [] 55.8 7.8e-16
CP001839_1503 1/1 106 171 .. 1 87 [] 41.6 8.5e-12

Alignments of top-scoring domains:
CP001839_1129: domain 1 of 1, from 185 to 252: score 96.5, E = 2.3e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+a++sHELRTPLt+I gyae+Lle ++l +++
CP001839_1 185 MRREFIATVSHELRTPLTSIHGYAETLLE---------DDLENKEL- 221

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++l++i++e+ r+ rLindlLdl+++e+
CP001839_1 222 ---------VKRFLKIIEEESARMTRLINDLLDLEKMEES 252

CP001839_0073: domain 1 of 1, from 253 to 321: score 87.3, E = 9.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ef+an+sHELRTPLtaI++yae+ + l +el+ ++
CP001839_0 253 MKTEFIANISHELRTPLTAIKAYAETVYNSL-------EELDLSTL- 291

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+le+i++++++l++L+n+lLd+sr+e
CP001839_0 292 ----------KEFLEVIIDQSNHLENLLNELLDFSRLERK 321

CP001839_1417: domain 1 of 1, from 537 to 603: score 60.0, E = 4.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a ++HE+R+P+t I g++ +++ + ++e++
CP001839_1 537 ILGEMTARVAHEIRNPITIIGGFIMRMKK---------HLDDPETL- 573

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+++i +e+ rl+ ++ ++L++s+ ++
CP001839_1 574 ----------KKYINIITNELSRLETIVKEILEYSKERQV 603

CP001839_0188: domain 1 of 1, from 192 to 258: score 55.8, E = 7.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f ++sHEL+TPL+++++ +++L+ +++l+++
CP001839_0 192 SLKRFSMDASHELKTPLSVLKTSLDVLKY--------REDLPDDV-- 228

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+++++ ++ ++++in+lL l + e+
CP001839_0 229 ----------KSKLNVMEKNVDKMSKQINQLLLLVKSESS 258

CP001839_1503: domain 1 of 1, from 106 to 171: score 41.6, E = 8.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak +f+ ++sHEL TPL+a ++++ lL++ e ++e+
CP001839_1 106 AKLDFVTAVSHELFTPLSASKANVFLLKD---------IENDPEK-- 141

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l +++r+++r++ +i++l l+ i+
CP001839_1 142 ----------LEILGKVERSLDRMETIIRQLKVLTMIQLR 171


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 3 0|=
-13 19 1|*===
-12 72 40|======*=====
-11 182 209|=============================== *
-10 316 388|===================================================== *
-9 329 401|======================================================= *
-8 281 300|=============================================== *
-7 224 189|===============================*======
-6 121 109|==================*==
-5 86 59|=========*=====
-4 53 32|=====*===
-3 36 16|==*===
-2 16 8|=*=
-1 9 4|*=
0 3 2|*
1 2 1|*
2 2 0|=
3 0 0|
4 5 0|=
5 0 0|
6 2 0|=
> 7 7 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 116.4682
P(chi-square) = 2.631e-20

Total sequences searched: 1768

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: