Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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3 projects found  

1 accessions found for Pirellula staleyi DSM 6068  

Data for CP001848  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001848.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001848_0807 CDS_1004876-1000932 96.3 6.8e-27 1
CP001848_2676 CDS_3495131-3497041 95.7 1e-26 1
CP001848_4218 CDS_5572387-5575167 91.5 1.6e-25 1
CP001848_3599 CDS_4748020-4749525 88.2 1.4e-24 1
CP001848_4474 CDS_5903574-5905601 83.2 3.5e-23 1
CP001848_3829 CDS_5043184-5040677 82.5 5.8e-23 1
CP001848_1391 CDS_1776865-1779348 79.7 3.5e-22 1
CP001848_3270 CDS_4272899-4274284 76.2 3.4e-21 1
CP001848_4050 CDS_5343981-5341252 76.1 3.6e-21 1
CP001848_4048 CDS_5338237-5340519 72.7 3.3e-20 1
CP001848_3203 CDS_4190645-4189158 64.5 7e-18 1
CP001848_3501 CDS_4621334-4622329 56.6 1.2e-15 1
CP001848_4242 CDS_5609807-5607285 53.5 9.3e-15 1
CP001848_3965 CDS_5211459-5212217 51.1 4.6e-14 1
CP001848_3042 CDS_3973885-3976146 43.6 5.8e-12 1
CP001848_0177 CDS_237599-239818 39.7 7.4e-11 1
CP001848_1080 CDS_1346578-1345790 38.0 2.3e-10 1
CP001848_0481 CDS_605582-607213 35.7 1e-09 1
CP001848_4285 CDS_5660668-5661516 34.1 2.8e-09 1
CP001848_3142 CDS_4089949-4091661 32.0 1.2e-08 1
CP001848_2843 CDS_3724097-3724942 31.3 1.8e-08 1
CP001848_4483 CDS_5919982-5917565 28.6 1e-07 1
CP001848_2411 CDS_3176711-3175281 28.5 1.1e-07 1
CP001848_1574 CDS_2003032-2004645 28.2 1.4e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001848_0807 1/1 599 664 .. 1 87 [] 96.3 6.8e-27
CP001848_2676 1/1 362 428 .. 1 87 [] 95.7 1e-26
CP001848_4218 1/1 497 566 .. 1 87 [] 91.5 1.6e-25
CP001848_3599 1/1 272 339 .. 1 87 [] 88.2 1.4e-24
CP001848_4474 1/1 270 339 .. 1 87 [] 83.2 3.5e-23
CP001848_3829 1/1 601 668 .. 1 87 [] 82.5 5.8e-23
CP001848_1391 1/1 440 506 .. 1 87 [] 79.7 3.5e-22
CP001848_3270 1/1 232 299 .. 1 87 [] 76.2 3.4e-21
CP001848_4050 1/1 671 738 .. 1 87 [] 76.1 3.6e-21
CP001848_4048 1/1 256 321 .. 1 87 [] 72.7 3.3e-20
CP001848_3203 1/1 242 308 .. 1 87 [] 64.5 7e-18
CP001848_3501 1/1 80 146 .. 1 87 [] 56.6 1.2e-15
CP001848_4242 1/1 614 682 .. 1 87 [] 53.5 9.3e-15
CP001848_3965 1/1 22 93 .. 1 87 [] 51.1 4.6e-14
CP001848_3042 1/1 526 596 .. 1 87 [] 43.6 5.8e-12
CP001848_0177 1/1 484 554 .. 1 87 [] 39.7 7.4e-11
CP001848_1080 1/1 45 110 .. 1 87 [] 38.0 2.3e-10
CP001848_0481 1/1 295 377 .. 1 87 [] 35.7 1e-09
CP001848_4285 1/1 64 130 .. 1 87 [] 34.1 2.8e-09
CP001848_3142 1/1 331 399 .. 1 87 [] 32.0 1.2e-08
CP001848_2843 1/1 29 94 .. 1 87 [] 31.3 1.8e-08
CP001848_4483 1/1 575 646 .. 1 87 [] 28.6 1e-07
CP001848_2411 1/1 240 310 .. 1 87 [] 28.5 1.1e-07
CP001848_1574 1/1 313 379 .. 1 87 [] 28.2 1.4e-07

Alignments of top-scoring domains:
CP001848_0807: domain 1 of 1, from 599 to 664: score 96.3, E = 6.8e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++++g++elL + t+l+e q
CP001848_0 599 AKSAFLANMSHEIRTPLNGVIGMLELLGT---------TTLDERQ-- 634

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+++++++a ll Lind+Ld+s+ieag
CP001848_0 635 ----------NRYVHIARSSAGTLLGLINDVLDFSKIEAG 664

CP001848_2676: domain 1 of 1, from 362 to 428: score 95.7, E = 1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+eflan+sHELRTPL++I+g++e+L + l+++q
CP001848_2 362 LKGEFLANMSHELRTPLNSIIGFSEVLAG--------IDSLTDKQ-- 398

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y + i++++++ll++ind+Ldl+++eag
CP001848_2 399 ----------KRYAQNIQKSGRSLLEMINDILDLAKLEAG 428

CP001848_4218: domain 1 of 1, from 497 to 566: score 91.5, E = 1.6e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+f+an+sHE+RTP+taI+gy+++Ll+++ ++ + ++
CP001848_4 497 TKSQFVANMSHEIRTPMTAILGYVDMLLDDA-------DAHPVSEK- 535

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ l ti++ +++ll++ind+Ld+s+ieag
CP001848_4 536 ---------WKQPLATIKSNGQHLLEIINDILDISKIEAG 566

CP001848_3599: domain 1 of 1, from 272 to 339: score 88.2, E = 1.4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ef++++sHE++TPL++Ir+y+elL + d++ ++ +r
CP001848_3 272 RNAEFVSAVSHEMKTPLSSIRAYVELLAD--------DEAEDDATR- 309

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l++i+++++rl+rLi++lL l+rieag
CP001848_3 310 ----------EEFLKVIESQTDRLQRLIDNLLNLARIEAG 339

CP001848_4474: domain 1 of 1, from 270 to 339: score 83.2, E = 3.5e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+eflan+sHE+RTP+taI+g+++lL d+ l e
CP001848_4 270 AKDEFLANMSHEIRTPITAILGFSDLLIH--------DQRLQNEF-- 306

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p++ e +t++r +e+ll+Lind+Ldls+ieag
CP001848_4 307 -------PNWFESAQTVYRNGEHLLSLINDVLDLSKIEAG 339

CP001848_3829: domain 1 of 1, from 601 to 668: score 82.5, E = 5.8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a++ HELRTPLt+ r+yae+L e++ s+eq+
CP001848_3 601 RRGAFVAAVTHELRTPLTTFRMYAEMLAEGM--------VSSPEQQ- 638

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl+t++ ea+rl +L++++L+++r+e
CP001848_3 639 ----------KSYLDTLRTEADRLAHLVENVLQYARLERT 668

CP001848_1391: domain 1 of 1, from 440 to 506: score 79.7, E = 3.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTP+taI+g++++ e s +q+
CP001848_1 440 AKSEFLANMSHELRTPMTAILGFVDIVAE---------NVSSNPQL- 476

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ti+r +e+l L+nd+Ldls+ieag
CP001848_1 477 ----------IDAAATIKRNGEHLMGLLNDILDLSKIEAG 506

CP001848_3270: domain 1 of 1, from 232 to 299: score 76.2, E = 3.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++an+sHEL+TPL+aI++yae+L+ ++ +++++
CP001848_3 232 LRRELVANVSHELKTPLAAIKAYAETLRL---------GAVNDPEIN 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++i+++aerl +Li d+L+++r eag
CP001848_3 270 ----------LTFVHRIEEQAERLHELILDILQIARVEAG 299

CP001848_4050: domain 1 of 1, from 671 to 738: score 76.1, E = 3.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l+++sH+L+TPL+aI g++++Lle + l++ +r
CP001848_4 671 VRSSLLSSVSHDLKTPLAAIAGASSTLLE--------ASSLPPSTR- 708

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t+ +ea rl rL++++L++s+++ag
CP001848_4 709 ----------EQLLQTVAEEAVRLGRLLENILQMSKLDAG 738

CP001848_4048: domain 1 of 1, from 256 to 321: score 72.7, E = 3.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ +lan+sHELR+PL+aI+gy++l l+ +l++ +
CP001848_4 256 EKDLLLANVSHELRNPLHAILGYSDLVLR----------DLPSSVA- 291

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l +i+++ae lrL+ndlLd+s++ +
CP001848_4 292 ----------REHLAIIRDAAETQLRLVNDLLDISQLTSS 321

CP001848_3203: domain 1 of 1, from 242 to 308: score 64.5, E = 7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +flan++HELRTPL+aIr +e++l +s+ +
CP001848_3 242 EKHDFLANAAHELRTPLAAIRSSVEVALS---------KGRSSAE-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+e+l +++e +l++L+n+lL l+ +a
CP001848_3 278 ---------YEELLAEMIEECASLESLVNQLLLLAESDAD 308

CP001848_3501: domain 1 of 1, from 80 to 146: score 56.6, E = 1.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f+ ++ HEL+ P++++++y+++L + ++ ++eq
CP001848_3 80 RQSNFIDSVTHELKSPIASLKLYLQTLNR--------RQVSPAEQ-- 116

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +l+++erl+ Lin lLd +r+e +
CP001848_3 117 ----------ENFYRYMLEDVERLDTLINHLLDAARLEKP 146

CP001848_4242: domain 1 of 1, from 614 to 682: score 53.5, E = 9.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH+L+ PL +I+g+a +L+ +l+ q++
CP001848_4 614 ELERFAYTVSHDLKSPLITISGFAGVLEQ----------DLDMGQMQ 650

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ r+ l+ i+++a +++ L+++lL+lsr +
CP001848_4 651 AA--------RDDLREIKDAATHMSLLLDELLQLSRVGRF 682

CP001848_3965: domain 1 of 1, from 22 to 93: score 51.1, E = 4.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++ +l+HE+++PL++Ir++ elL e++ t++++++
CP001848_3 22 ELAALAGSLAHEIKNPLSVIRMNMELLAEDFA------TPQTPKE-- 60

peLRledpeyreyletil...reaerllrLindlLdlsrieag<-*
r++l +i+ +r+ rl++L+nd+L +sr++
CP001848_3 61 ----------RRALAKIEmvsRQCTRLENLLNDFLRFSRAGRL 93

CP001848_3042: domain 1 of 1, from 526 to 596: score 43.6, E = 5.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a+++HEL++PL+aI +yae +++ +++ + ls e++
CP001848_3 526 TMGEMAAGIAHELNQPLSAIELYAEGCQR-----ALEMGVLSTEEQ- 566

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l i + a+r+ ++i++l+ ++ +
CP001848_3 567 ----------LSKLVEIASLADRCGEIIRRLRLFAMNRDS 596

CP001848_0177: domain 1 of 1, from 484 to 554: score 39.7, E = 7.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+l+HEL++PL+aI+ ya ++ d ++ ++ ++
CP001848_0 484 ALGEMAAGLAHELNQPLHAISNYARGVVRRID-----SARSTPADL- 524

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l i e++r ++i+++ + +
CP001848_0 525 ----------REALAEIVAESDRAAAIIRRVSSFVSKRPY 554

CP001848_1080: domain 1 of 1, from 45 to 110: score 38.0, E = 2.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ +lsHE+++PL+ I + a++Ll+ +e ++
CP001848_1 45 SLHAFAYGLSHEINNPLANIATRAQTLLA---------DEPHPDR-- 80

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l +i +a r +++ d++ +++
CP001848_1 81 ----------KRRLAVIVAQAFRAHEMLADVMLFAKPPRL 110

CP001848_0481: domain 1 of 1, from 295 to 377: score 35.7, E = 1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
+ + ++a+++HE+++PL++I ae L+ +l+ l+ d +++ eq+
CP001848_0 295 SVGFLAAGVAHEINNPLASIAWCAESLESRLY-DiLHDDLTKPTEQQ 340

lpeLR.ledpeyreyletilreaerllrLindlLdlsrieag<-*
e l r+yl +i++ea r+ + + lLd+sr++
CP001848_0 341 SAEIAvL-----RKYLTRIQDEAFRCKGITDGLLDFSRLGDV 377

CP001848_4285: domain 1 of 1, from 64 to 130: score 34.1, E = 2.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++++++HE R+ L +++y+ lL++ + ++++
CP001848_4 64 DLGQMASHVAHEVRNSLVPMKLYLTLLRR--------RMGHDADT-- 100

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++le + l+ +ndlL +s + +
CP001848_4 101 ----------AQLLEQFVSGFSALETTVNDLLHFSSDRDP 130

CP001848_3142: domain 1 of 1, from 331 to 399: score 32.0, E = 1.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++ +a+lsH +++ L +Irg + l++e+l + + ++
CP001848_3 331 AMGQTIATLSHHIKNILQGIRGGSFLIEEGL------RVTDNDVV-- 369

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +++++ er+++L+ d+L++s+ +++
CP001848_3 370 ----------RKGWRIVEKNQERISNLVMDMLTFSKQREP 399

CP001848_2843: domain 1 of 1, from 29 to 94: score 31.3, E = 1.8e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e+l + HE+++ L +I+ ya l + +++e++r
CP001848_2 29 AIGELLGTTTHEFNNVLMTILNYARLGIR----------HKDEPTR- 64

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e+il +++r ++ + +L ++r ++
CP001848_2 65 ----------DKAFEKILAASQRAAKITSSVLGMARNRSD 94

CP001848_4483: domain 1 of 1, from 575 to 646: score 28.6, E = 1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a l+HEL++PL a+ ya++++ + ag++ + + +
CP001848_4 575 TMGQLAAELAHELNQPLYALANYAQAAQG----LVAGWEVPNKQML- 616

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + ++a+r ++ ++++ + r ++
CP001848_4 617 ----------LDWTAQMMQQARRASEVVRRITSFVRQGEL 646

CP001848_2411: domain 1 of 1, from 240 to 310: score 28.5, E = 1.1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++H+ R+ t+ r++++lL+++l+ ++ ++ + +
CP001848_2 240 TLGQLGGGIAHQVRNAATGCRLALDLLERDLE-----SGRADIDAN- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e le++ +++ +++ +++lL+l r e+
CP001848_2 281 ----------HESLEVATQQLSLIESYVQRLLTLGRKETR 310

CP001848_1574: domain 1 of 1, from 313 to 379: score 28.2, E = 1.4e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +++ a+l+HE R+ L I++++elL+ e++ +++s+ ++
CP001848_1 313 AIGQMSAGLAHEARNALQRIQAFCELLELEVE------SNASAVEL- 352

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++i+++ ++ rL ++++ ++ +
CP001848_1 353 -------------VRRIQNAQGHMHRLFDEVRGYAAPVNL 379


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-15 2 0|=
-14 18 0|==
-13 64 3|*====
-12 202 107|=======*======
-11 375 559|========================= *
-10 678 1037|============================================== *
-9 871 1071|==========================================================*
-8 830 802|=====================================================*==
-7 636 505|=================================*=========
-6 408 290|===================*========
-5 270 159|==========*=======
-4 153 85|=====*=====
-3 80 45|==*===
-2 51 23|=*==
-1 19 12|*=
0 16 6|*=
1 9 3|*
2 5 1|*
> 3 30 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 592.8153
P(chi-square) = 0

Total sequences searched: 4717

Whole sequence top hits:
tophits_s report:
Total hits: 24
Satisfying E cutoff: 24
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 24
Satisfying E cutoff: 24
Total memory: 30K


Acknowledgements:

This research is funded by:

Developed by: