Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
3 projects found  

1 accessions found for Pirellula staleyi DSM 6068  

Data for CP001848  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001848.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001848_1179 CDS_1479506-1475790 45.5 4.8e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001848_1179 1/1 1035 1102 .. 1 70 [] 45.5 4.8e-13

Alignments of top-scoring domains:
CP001848_1179: domain 1 of 1, from 1035 to 1102: score 45.5, E = 4.8e-13
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
E +RI ++LHDsv+Q L+a+++ ++ ++ l ++dp a + ++++
CP001848_1 1035 EQRRIGQDLHDSVSQELTALSMLAGDLAETL--RTDPLNASDLVERV 1079

relarealaevRrllgdLRpaal<-*
+ ++++ +++R++ ++L p
CP001848_1 1080 VQGLHRSRQDLRAVMRGLCPVSV 1102


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-14 15 0|==
-13 76 0|======
-12 120 52|===*=====
-11 236 432|================= *
-10 556 1003|======================================== *
-9 799 1139|==========================================================*
-8 691 877|================================================== *
-7 666 551|=======================================*========
-6 511 312|======================*==============
-5 468 167|===========*======================
-4 213 87|======*=========
-3 134 44|===*======
-2 93 22|=*=====
-1 53 11|*===
0 27 5|*=
1 21 3|*=
2 17 1|*=
3 11 0|=
4 4 0|=
5 0 0|
6 1 0|=
7 0 0|
> 8 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1994.2552
P(chi-square) = 0

Total sequences searched: 4717

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: