Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Bifidobacterium animalis subsp. lactis BB-12  

Data for CP001853  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001853.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001853_1517 CDS_1789293-1787788 121.5 9e-35 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001853_1517 1/1 301 384 .. 1 94 [] 121.5 9e-35

Alignments of top-scoring domains:
CP001853_1517: domain 1 of 1, from 301 to 384: score 121.5, E = 9e-35
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ +S+LLrLQark+k++ev ++ L+E+ +RV++
CP001853_1 301 EIHHRVKNNLQAVSALLRLQARKTKSQEV-----KKELQEAMRRVQT 342

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A++HE L+++ d ++vdf+ ++++L++ ++++ ++++i +
CP001853_1 343 IAMVHEGLSQTAD-ENVDFDKVISNLLRMSVDLASMRDQHIT----I 384


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 5 0|=
-14 16 0|===
-13 37 10|=*====
-12 104 107|===============*
-11 333 300|==========================================*=====
-10 390 388|=======================================================*
-9 274 328|======================================== *
-8 229 220|===============================*=
-7 92 130|============== *
-6 95 72|==========*===
-5 29 39|=====*
-4 14 20|==*
-3 9 10|=*
-2 6 5|*
-1 5 2|*
> 0 4 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 105.9316
P(chi-square) = 1.186e-17

Total sequences searched: 1642

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: