Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Conexibacter woesei DSM 14684  

Data for CP001854  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001854.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001854_5004 CDS_5361317-5360163 32.7 5.6e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001854_5004 1/1 192 236 .. 1 52 [. 32.7 5.6e-09

Alignments of top-scoring domains:
CP001854_5004: domain 1 of 1, from 192 to 236: score 32.7, E = 5.6e-09
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E HHR+KN+LQ+++ LL L +v a+ + R++S
CP001854_5 192 EAHHRIKNSLQTVADLLLLGRPADAHDAV-------AFDATAARIRS 231

mAliH<-*
+A +H
CP001854_5 232 IAAVH 236


Histogram of all scores:
score obs exp (one = represents 29 sequences)
----- --- ---
-15 12 0|=
-14 24 0|=
-13 68 37|=*=
-12 344 388|============ *
-11 1672 1081|=====================================*====================
-10 1433 1399|================================================*=
-9 905 1182|================================ *
-8 682 793|======================== *
-7 316 471|=========== *
-6 235 262|=========*
-5 107 141|====*
-4 62 74|==*
-3 27 39|=*
-2 13 20|*
-1 9 10|*
0 2 5|*
1 0 2|*
2 1 1|*
> 3 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 505.8254
P(chi-square) = 0

Total sequences searched: 5914

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: