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2 accessions found for Archaeoglobus profundus DSM 5631  

Data for CP001857  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001857.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001857_1423 CDS_1240180-1241547 30.0 1.6e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001857_1423 1/1 388 444 .. 1 87 [] 30.0 1.6e-08

Alignments of top-scoring domains:
CP001857_1423: domain 1 of 1, from 388 to 444: score 30.0, E = 1.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +e +a+l ++R+PLt+I+g ae+ +
CP001857_1 388 ENTEKIATLIDQIRNPLTVIQGIAEIKHD------------------ 416

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey e+i ++++r++rL++d Ld + e+
CP001857_1 417 -----------EYYEKIVEQVKRIERLLED-LDKGWVESK 444


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 2 0|=
-14 13 0|==
-13 50 1|*=======
-12 109 41|=====*==========
-11 226 215|==============================*==
-10 345 400|================================================== *
-9 358 413|==================================================== *
-8 261 309|====================================== *
-7 180 194|========================== *
-6 110 112|===============*
-5 61 61|========*
-4 35 32|====*
-3 32 17|==*==
-2 12 9|=*
-1 11 4|*=
0 5 2|*
1 2 1|*
2 1 0|=
3 1 0|=
4 0 0|
> 5 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 146.7836
P(chi-square) = 1.709e-26

Total sequences searched: 1819

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: