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7 accessions found for Haloterrigena turkmenica DSM 5511  

Data for CP001861  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001861.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001861_0249 CDS_302969-305620 53.8 9.8e-16 1
CP001861_0180 CDS_228536-226083 50.4 8.9e-15 1
CP001861_0504 CDS_587790-589841 42.2 1.8e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001861_0249 1/1 659 727 .. 1 87 [] 53.8 9.8e-16
CP001861_0180 1/1 598 666 .. 1 87 [] 50.4 8.9e-15
CP001861_0504 1/1 458 526 .. 1 87 [] 42.2 1.8e-12

Alignments of top-scoring domains:
CP001861_0249: domain 1 of 1, from 659 to 727: score 53.8, E = 9.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH+L PL ++ y++lL++++d ++l+e+
CP001861_0 659 RLEQFAYAASHDLQEPLRMVSSYLQLLERRYD------DDLDEDG-- 697

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+le + + a+r++++i+ lL +sr e+
CP001861_0 698 ----------QEFLEFAVDGADRMREMIDGLLKYSRVETR 727

CP001861_0180: domain 1 of 1, from 598 to 666: score 50.4, E = 8.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH+L PL + y++lL+ ++ +el+ +
CP001861_0 598 RLEQFAYAASHDLQEPLRMVTSYLQLLESRYA------DELDGDA-- 636

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++e + + aer++++i+ lL++sr e++
CP001861_0 637 ----------AEFIEFAVDGAERMRKMIDGLLEYSRVETQ 666

CP001861_0504: domain 1 of 1, from 458 to 526: score 42.2, E = 1.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+ ++sH+L PL ++ y++lL+ ++ ++l+++
CP001861_0 458 ELKRFAHAASHDLQEPLRMVSSYLQLLEQRYG------DDLDADA-- 496

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++e + + a+r++++++ lL++s+ +
CP001861_0 497 ----------TEFIEFAVDGADRMRAMVDALLEYSQVSTR 526


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-15 1 0|=
-14 4 0|==
-13 6 0|==
-12 21 13|====*==
-11 66 70|====================== *
-10 101 130|================================== *
-9 120 134|======================================== *
-8 106 100|=================================*==
-7 81 63|====================*======
-6 33 36|===========*
-5 25 20|======*==
-4 9 10|===*
-3 6 5|=*
-2 6 2|*=
> -1 8 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 19.5054
P(chi-square) = 0.02122

Total sequences searched: 593

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: