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7 accessions found for Haloterrigena turkmenica DSM 5511  

Data for CP001863  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001863.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001863_0142 CDS_140656-141741 57.7 2.3e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001863_0142 1/1 140 208 .. 1 87 [] 57.7 2.3e-17

Alignments of top-scoring domains:
CP001863_0142: domain 1 of 1, from 140 to 208: score 57.7, E = 2.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+LR PL + y++lL+ ++ ++el+e+
CP001863_0 140 RLQQFAYVASHDLREPLRMVTSYLQLLESRY------SDELDEDA-- 178

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++e + + aer++++i+ lL++sr e++
CP001863_0 179 ----------KEFIEFAVDGAERMEAMIEGLLTYSRVETQ 208


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-14 2 0|==
-13 6 0|======
-12 14 3|==*===========
-11 22 20|===================*==
-10 36 38|==================================== *
-9 37 39|===================================== *
-8 28 29|============================*
-7 11 18|=========== *
-6 10 10|=========*
-5 4 5|====*
-4 2 3|==*
-3 0 1|*
-2 1 0|=
-1 0 0|
0 0 0|
> 1 2 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 3.7922
P(chi-square) = 0.5797

Total sequences searched: 175

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: