hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001864.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001864_0126 CDS_129394-131490 47.9 1.2e-14 1
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001864_0126 1/1 475 543 .. 1 87 [] 47.9 1.2e-14
Alignments of top-scoring domains:
CP001864_0126: domain 1 of 1, from 475 to 543: score 47.9, E = 1.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH+L PL ++ y+ l + ++ +el+++
CP001864_0 475 RLEQFAYAASHDLQEPLRMVSSYLGLVESRYA------DELDDDA-- 513
peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++e + + a+r++++i+ lL++sri+++
CP001864_0 514 ----------MEFIEFAVDGADRMREMIDGLLEYSRIDTQ 543
Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-13 3 0|===
-12 11 3|==*========
-11 21 18|=================*===
-10 30 34|============================== *
-9 23 36|======================= *
-8 23 27|======================= *
-7 18 17|================*=
-6 14 9|========*=====
-5 5 5|====*
-4 4 2|=*==
-3 3 1|*==
> -2 4 -|====
% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 8.1873
P(chi-square) = 0.2247
Total sequences searched: 159
Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K
