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Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Geodermatophilus obscurus DSM 43160  

Data for CP001867  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001867.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001867_0268 CDS_291320-294193 96.8 5.1e-27 1
CP001867_1242 CDS_1384811-1383585 86.8 3.4e-24 2
CP001867_4394 CDS_4873700-4875268 83.3 3.4e-23 1
CP001867_1434 CDS_1575848-1573944 82.8 4.6e-23 1
CP001867_0110 CDS_120848-125983 78.0 1.1e-21 1
CP001867_4339 CDS_4825097-4823853 74.7 9.3e-21 1
CP001867_4538 CDS_5030962-5033721 69.1 3.7e-19 1
CP001867_4034 CDS_4503279-4501534 69.0 3.9e-19 1
CP001867_4429 CDS_4910752-4909211 67.1 1.3e-18 1
CP001867_0722 CDS_818710-817373 56.2 1.6e-15 1
CP001867_2632 CDS_2931177-2929804 55.6 2.4e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001867_0268 1/1 311 376 .. 1 87 [] 96.8 5.1e-27
CP001867_1242 2/2 170 236 .. 1 87 [] 86.5 4.1e-24
CP001867_4394 1/1 271 338 .. 1 87 [] 83.3 3.4e-23
CP001867_1434 1/1 400 468 .. 1 87 [] 82.8 4.6e-23
CP001867_0110 1/1 347 415 .. 1 87 [] 78.0 1.1e-21
CP001867_4339 1/1 157 223 .. 1 87 [] 74.7 9.3e-21
CP001867_4538 1/1 332 400 .. 1 87 [] 69.1 3.7e-19
CP001867_4034 1/1 334 401 .. 1 87 [] 69.0 3.9e-19
CP001867_4429 1/1 264 328 .. 1 87 [] 67.1 1.3e-18
CP001867_0722 1/1 226 290 .. 1 87 [] 56.2 1.6e-15
CP001867_2632 1/1 238 305 .. 1 87 [] 55.6 2.4e-15

Alignments of top-scoring domains:
CP001867_0268: domain 1 of 1, from 311 to 376: score 96.8, E = 5.1e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fla++sHE+RTPL+a++g++++Ll+ t+l++eq
CP001867_0 311 AKTAFLATMSHEIRTPLNAVLGLTDVLLA---------TDLTDEQ-- 346

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r let+ ++++ll+Lind+Ld+s+ieag
CP001867_0 347 ----------RGHLETVAGSGDSLLSLINDILDFSKIEAG 376

CP001867_1242: domain 2 of 2, from 170 to 236: score 86.5, E = 4.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f++ +sHELRTPLt+I+gy+el l+ d+ l++e
CP001867_1 170 MKDQFVSLISHELRTPLTSILGYLELVLD--------DPSLGDEP-- 206

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl t++r a+rllrL+ dlL ++ +ag
CP001867_1 207 ----------RRYLGTVERNAQRLLRLVGDLLFTAQVDAG 236

CP001867_4394: domain 1 of 1, from 271 to 338: score 83.3, E = 3.4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPLt+Irg+ael + ++ s+e++
CP001867_4 271 RMRRFVADASHELRTPLTSIRGFAELYRQGA--------VGSPEET- 308

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++i++e+ r+ L++dlL+l+r++++
CP001867_4 309 ----------ARLMQRIESEGARMGVLVEDLLQLARLDQQ 338

CP001867_1434: domain 1 of 1, from 400 to 468: score 82.8, E = 4.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef++ +sHELRTPLt+I+g ++lL +++ ++ ++ q
CP001867_1 400 LKDEFISVVSHELRTPLTSIKGSLSLLTNGVM------GPVPAAQ-- 438

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ ++r aerl +L++d+Ldl r+eag
CP001867_1 439 ----------QPLLDMARRNAERLGELVDDILDLDRLEAG 468

CP001867_0110: domain 1 of 1, from 347 to 415: score 78.0, E = 1.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++f++n+sHE+RTPLt I g + L++ ++ + ++ r
CP001867_0 347 AKTDFFSNVSHEFRTPLTLIAGPVAELRA--------SPVAASDPR- 384

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+re le+i+r a+rl rL+n lLd+sri+ag
CP001867_0 385 ---------VREELEVIERNAQRLGRLVNTLLDFSRIQAG 415

CP001867_4339: domain 1 of 1, from 157 to 223: score 74.7, E = 9.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+ HEL+TP+ a++++ae++++ ++ ++e++
CP001867_4 157 VRRDFVANVGHELKTPVGALSLLAEAIED---------AADDPETV- 193

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ ++ +ea+rl rL+++l dlsr++ g
CP001867_4 194 ----------RRFATRMTHEADRLARLVRELIDLSRLQGG 223

CP001867_4538: domain 1 of 1, from 332 to 400: score 69.1, E = 3.7e-19
*->akseflanlsHELRTPLtaIrg.yaelLleeldkvlagdtelseeqr
ak+ f+an+sHELRTPLt ++g+ a++L e++ + l+ +
CP001867_4 332 AKTAFFANVSHELRTPLTLLLGpIADTLAENG-------PVLPGDV- 370

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l +lr ++rl+rL+ndlL++ ieag
CP001867_4 371 -----------RESLTLALRNGQRLQRLVNDLLEFVSIEAG 400

CP001867_4034: domain 1 of 1, from 334 to 401: score 69.0, E = 3.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt+++++ae+L e ++++ ++
CP001867_4 334 LQQRFTSDVSHELRTPLTTVQMAAEVLYE-------SREDFPPHV-- 371

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e ++ e++r + L+ dlL++sr +ag
CP001867_4 372 ----------ARSAELMHAELDRFEVLLTDLLEISRYDAG 401

CP001867_4429: domain 1 of 1, from 264 to 328: score 67.1, E = 1.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++fl ++ HELRTP+t +rg++e+ + + + +
CP001867_4 264 AQRRFLDDAGHELRTPITIVRGHLEVVDA----------TDPGDV-- 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + +++e++r++r+++dlL l+r+e++
CP001867_4 299 ----------RETVALVDDELDRMNRIVSDLLLLARAEQP 328

CP001867_0722: domain 1 of 1, from 226 to 290: score 56.2, E = 1.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f a++sH+LRTPL+++r+ +e++le +t++++
CP001867_0 226 RERAFSADASHQLRTPLAGMRLRLEAALE--------RTDADP---- 260

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++ l +a+rl+++i++lL l+r+++
CP001867_0 261 ----------RQAIAASLVDADRLEAIIDELLGLARAGQA 290

CP001867_2632: domain 1 of 1, from 238 to 305: score 55.6, E = 2.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+ ++sHELR PLt++ + +e+L + +++els+
CP001867_2 238 RDARFVGDVSHELRSPLTGVVTSVEVLAA-------RRAELSPRA-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+ ++ e+ r +++++dlL l+r++
CP001867_2 276 ----------DQALSLVEGELARFRQMLDDLLALARLDGA 305


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-15 3 0|=
-14 21 0|==
-13 51 3|*==
-12 210 109|======*======
-11 458 570|=========================== *
-10 805 1057|================================================ *
-9 964 1092|========================================================= *
-8 858 817|================================================*==
-7 605 515|==============================*=====
-6 345 296|=================*===
-5 233 162|=========*====
-4 108 87|=====*=
-3 62 46|==*=
-2 37 24|=*=
-1 18 12|*=
0 8 6|*
1 4 3|*
2 5 1|*
3 1 0|=
> 4 15 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 264.4436
P(chi-square) = 0

Total sequences searched: 4811

Whole sequence top hits:
tophits_s report:
Total hits: 11
Satisfying E cutoff: 11
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 11
Satisfying E cutoff: 11
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: