Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Thermobispora bispora DSM 43833  

Data for CP001874  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001874.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001874_2871 CDS_3420737-3419274 103.7 2.3e-29 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001874_2871 1/1 294 361 .. 1 74 [. 103.7 2.3e-29

Alignments of top-scoring domains:
CP001874_2871: domain 1 of 1, from 294 to 361: score 103.7, E = 2.3e-29
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQar+ +++e +eaL+E+++RV S
CP001874_2 294 EIHHRVKNNLQTVAALLRLQARRLTNPEG-----REALHEAVRRVGS 335

mAliHEeLYksedldtvdfseYlekLt<-*
+A++HE L + + + v f++ ++++
CP001874_2 336 IAIVHEILAQMPE-EMVAFDDIADRVI 361


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-15 9 0|=
-14 23 0|==
-13 66 22|=*==
-12 212 232|=============*
-11 985 648|======================================*===================
-10 781 839|============================================== *
-9 547 708|================================= *
-8 411 475|========================= *
-7 209 282|============= *
-6 174 157|=========*=
-5 47 84|=== *
-4 42 44|==*
-3 17 23|=*
-2 6 12|*
-1 7 6|*
0 4 3|*
1 3 1|*
2 0 0|
3 1 0|=
> 4 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 355.5457
P(chi-square) = 0

Total sequences searched: 3546

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: