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Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Pantoea ananatis LMG 20103  

Data for CP001875  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001875.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001875_0954 CDS_1101976-1103289 86.9 2.9e-24 1
CP001875_3080 CDS_3447679-3450465 85.1 9.4e-24 1
CP001875_2611 CDS_2933855-2931006 75.7 4.3e-21 1
CP001875_0419 CDS_494858-497221 72.8 2.9e-20 1
CP001875_2882 CDS_3238228-3236801 69.8 2e-19 1
CP001875_3950 CDS_4359975-4361054 61.1 6e-17 1
CP001875_3787 CDS_4184478-4181803 59.7 1.5e-16 1
CP001875_2519 CDS_2810402-2811790 59.2 2.1e-16 1
CP001875_3875 CDS_4287830-4289209 58.5 3.1e-16 2
CP001875_2766 CDS_3100809-3099457 56.4 1.3e-15 1
CP001875_1196 CDS_1360130-1357056 55.0 3.2e-15 1
CP001875_0011 CDS_8796-10136 54.3 5e-15 1
CP001875_3681 CDS_4062976-4061612 54.2 5.4e-15 1
CP001875_0307 CDS_375087-373720 53.9 6.5e-15 1
CP001875_2238 CDS_2491200-2492267 49.5 1.2e-13 1
CP001875_2674 CDS_3005812-3004424 48.3 2.5e-13 1
CP001875_2969 CDS_3323409-3324476 47.4 4.4e-13 2
CP001875_2000 CDS_2236764-2238065 42.9 8.3e-12 1
CP001875_3996 CDS_4415052-4413865 35.8 8.5e-10 1
CP001875_2385 CDS_2654287-2656887 29.2 6.6e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001875_0954 1/1 203 269 .. 1 87 [] 86.9 2.9e-24
CP001875_3080 1/1 311 376 .. 1 87 [] 85.1 9.4e-24
CP001875_2611 1/1 469 534 .. 1 87 [] 75.7 4.3e-21
CP001875_0419 1/1 291 356 .. 1 87 [] 72.8 2.9e-20
CP001875_2882 1/1 249 317 .. 1 87 [] 69.8 2e-19
CP001875_3950 1/1 139 196 .. 1 79 [. 61.1 6e-17
CP001875_3787 1/1 660 727 .. 1 87 [] 59.7 1.5e-16
CP001875_2519 1/1 239 303 .. 1 87 [] 59.2 2.1e-16
CP001875_3875 1/2 238 300 .. 1 87 [] 58.1 4.2e-16
CP001875_2766 1/1 229 292 .. 1 87 [] 56.4 1.3e-15
CP001875_1196 1/1 557 618 .. 1 87 [] 55.0 3.2e-15
CP001875_0011 1/1 234 300 .. 1 87 [] 54.3 5e-15
CP001875_3681 1/1 233 293 .. 1 87 [] 54.2 5.4e-15
CP001875_0307 1/1 234 299 .. 1 87 [] 53.9 6.5e-15
CP001875_2238 1/1 142 202 .. 1 87 [] 49.5 1.2e-13
CP001875_2674 1/1 243 308 .. 1 87 [] 48.3 2.5e-13
CP001875_2969 2/2 136 200 .. 1 87 [] 47.3 4.8e-13
CP001875_2000 1/1 211 271 .. 1 87 [] 42.9 8.3e-12
CP001875_3996 1/1 170 233 .. 1 87 [] 35.8 8.5e-10
CP001875_2385 1/1 488 553 .. 1 87 [] 29.2 6.6e-08

Alignments of top-scoring domains:
CP001875_0954: domain 1 of 1, from 203 to 269: score 86.9, E = 2.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e++ + + ++ r
CP001875_0 203 ARRNFFANVSHELRTPLTVLQGYLEMMND---------SVMNQRSR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+t+ ++++r+++L+ +lL+lsriea
CP001875_0 240 ----------DKALHTMSEQTRRMDSLVKQLLTLSRIEAA 269

CP001875_3080: domain 1 of 1, from 311 to 376: score 85.1, E = 9.4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ +l+ t+l q
CP001875_3 311 IKSEFLANMSHELRTPLNGVLGFTRQMLK---------TPLRTTQ-- 346

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y ti+r+a+ ll++ind+Ld+sr+eag
CP001875_3 347 ----------RDYMLTIERSANNLLSIINDVLDFSRLEAG 376

CP001875_2611: domain 1 of 1, from 469 to 534: score 75.7, E = 4.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ l++
CP001875_2 469 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------RQLPSGI-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + +++ ll++i+d+Ld+s+ie++
CP001875_2 505 ----------DSLVTAMNNSSSLLLKIISDILDFSKIESE 534

CP001875_0419: domain 1 of 1, from 291 to 356: score 72.8, E = 2.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ f++++sHELRTPL++I g++ +Ll+ t+l+ eq
CP001875_0 291 EKTTFISTISHELRTPLNGIVGLSRILLD---------TDLNQEQ-- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+ +a l ++ nd+ + +ie
CP001875_0 327 ----------LKYLKTIHVSAITLGNIFNDVIEVDKIERR 356

CP001875_2882: domain 1 of 1, from 249 to 317: score 69.8, E = 2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ efl++lsHEL+TPL+++r +elL +e+ + l++eq
CP001875_2 249 QRHEFLRHLSHELKTPLASLREGTELLADEVA------GILNPEQ-- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++++++++++l+rLi++lLd+ r a
CP001875_2 288 ----------KEIVSILDNSSRHLQRLIEQLLDYNRKLAD 317

CP001875_3950: domain 1 of 1, from 139 to 196: score 61.1, E = 6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CP001875_3 139 AARDLVRGLAHEIKNPLGGLRGAAQLLSR----------ALPDPAL- 174

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
CP001875_3 175 ----------NEYTKVIIEQADRLRNLVDRLL 196

CP001875_3787: domain 1 of 1, from 660 to 727: score 59.7, E = 1.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l++lsH+LRTPLt++ g ae+L +l + +++
CP001875_3 660 LRNALLSALSHDLRTPLTVLFGQAEMLMLDL-------ASDNSKY-- 697

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i++++ + rL++++Ld++ri++g
CP001875_3 698 ----------VPQASQIREQTLSTIRLVSNMLDMARIQSG 727

CP001875_2519: domain 1 of 1, from 239 to 303: score 59.2, E = 2.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a++sHELRTPL+ +rg +e++++++ +l+++
CP001875_2 239 MRRAFMADISHELRTPLAILRGELEAMQDGV-------RKLTPDA-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++e+ l +L++dl +ls + g
CP001875_2 277 -------------ITSLQSEVALLTKLVDDLHQLSLSDVG 303

CP001875_3875: domain 1 of 2, from 238 to 300: score 58.1, E = 4.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+++sHELRTPLt +++++ lL++ ++
CP001875_3 238 GQQRLLSDISHELRTPLTRLQLATALLRR---------RQGEGKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+ +indlL lsr ++
CP001875_3 274 -------------LERIEMEAQRLDGMINDLLVLSRTQHK 300

CP001875_2766: domain 1 of 1, from 229 to 292: score 56.4, E = 1.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ +l ++sHELR PL+ +++++ l++ ++e
CP001875_2 229 AREALLHDISHELRSPLARLQLATGLARQ-----------RPENV-- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i++ea+rl+++i +lL+l+r+e++
CP001875_2 263 ----------STSLDRIDEEAQRLDKMIGELLTLARAEHE 292

CP001875_1196: domain 1 of 1, from 557 to 618: score 55.0, E = 3.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sHELRTP+ aI+g++el + +s++
CP001875_1 557 MKSQFLATVSHELRTPMQAILGLLELEKQ----------QRSSDN-- 591

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ ++r+a++l L+ndl d +rie++
CP001875_1 592 -------------LQLLHRSAQSLMTLLNDLQDHARIENN 618

CP001875_0011: domain 1 of 1, from 234 to 300: score 54.3, E = 5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PL+a+r +e+++ ++ +e r
CP001875_0 234 RERRFTSDAAHELRSPLAALRVQSEVIQL---------AADDEAMR- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+ ++ + r rL+++lL+lsriea+
CP001875_0 271 ----------THALQQLDAGITRATRLVDQLLTLSRIEAE 300

CP001875_3681: domain 1 of 1, from 233 to 293: score 54.2, E = 5.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e ++
CP001875_3 233 DRTLLMAGVSHDLRTPLTRIRLATEMMNE---------QD------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
CP001875_3 264 ----------GYLAESINKDIEECNAIIEQFIDYLRTGQE 293

CP001875_0307: domain 1 of 1, from 234 to 299: score 53.9, E = 6.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +++HELRTP+ta+ + +e L+ + ++ e
CP001875_0 234 SQRQFMEDAAHELRTPVTAVTLQLENLRQ---------HIQPGEA-- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++ + r ++L+ +lL +sr e +
CP001875_0 270 ----------SRQFAQLESGVTRTRHLVTQLLNMSRWEDQ 299

CP001875_2238: domain 1 of 1, from 142 to 202: score 49.5, E = 1.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+a+++HELRTPL+++r+++elL++++
CP001875_2 142 RERLFTADVAHELRTPLAGLRLHLELLQRNQ---------------- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ +l+ +++++ +++lL+l+r++++
CP001875_2 173 ----------AVDTQPLLQRLDQMSGNVSQLLQLTRAGQQ 202

CP001875_2674: domain 1 of 1, from 243 to 308: score 48.3, E = 2.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f a+++H+LRTPLt +++ ++++l+ ++++e+
CP001875_2 243 RQDRFSADAAHQLRTPLTILKTQISTALD---------SDRPEQW-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l++++ ++ L ++lL+l+ri a
CP001875_2 279 ----------RESLQSMHYTLDDTILLTDRLLQLARIKAR 308

CP001875_2969: domain 2 of 2, from 136 to 200: score 47.3, E = 4.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + a+++HELRTP+t +rg ++ L ee++ e++
CP001875_2 136 QRKSWNAAIAHELRTPVTILRGRLQGLVEEVF----------EPD-- 170

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++lr++e l+rLi+dl+ +e g
CP001875_2 171 ----------PPLFKSLLRQTEGLSRLIDDLRVVGAAEGG 200

CP001875_2000: domain 1 of 1, from 211 to 271: score 42.9, E = 8.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r +e+ + l+e +
CP001875_2 211 SKKQLIDGIAHELRTPLVRLRYRLEMSDN-----------LTEAE-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ r++ +l++Li++lL+++r++ +
CP001875_2 245 -------------SAALNRDVSQLESLIEELLTYARLDRP 271

CP001875_3996: domain 1 of 1, from 170 to 233: score 35.8, E = 8.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k +a ++HELR PLta +g ++ + + + +e
CP001875_3 170 LKASHVA-IAHELRSPLTAAMGRLQGIVD---------GVFEPEP-- 204

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i +++ +l+rL ++l ls ++ag
CP001875_3 205 -----------RQFSMIMKQLTQLSRLTDELHLLSLADAG 233

CP001875_2385: domain 1 of 1, from 488 to 553: score 29.2, E = 6.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++ + L++I+g + l + +l ++ + r
CP001875_2 488 AVGQLTGGIAHDFDNLLAVIIGSLALTEGQL-------APGPVASR- 526

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++++a+r L ++lL +sr ++
CP001875_2 527 -------------IERARQAADRAALLTQRLLAFSRKQTL 553


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-14 7 0|=
-13 49 3|*===
-12 173 96|======*======
-11 374 502|=========================== *
-10 716 931|==================================================== *
-9 787 962|========================================================= *
-8 724 720|===================================================*
-7 569 454|================================*========
-6 331 261|==================*=====
-5 197 143|==========*====
-4 152 76|=====*=====
-3 56 40|==*=
-2 31 21|=*=
-1 23 11|*=
0 7 5|*
1 11 3|*
2 3 1|*
3 2 0|=
4 1 0|=
5 1 0|=
6 0 0|
7 0 0|
> 8 23 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 339.5840
P(chi-square) = 0

Total sequences searched: 4237

Whole sequence top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: