Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Pantoea ananatis LMG 20103  

Data for CP001875  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001875.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001875_2796 CDS_3134006-3135802 62.2 5e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001875_2796 1/1 396 463 .. 1 70 [] 62.2 5e-18

Alignments of top-scoring domains:
CP001875_2796: domain 1 of 1, from 396 to 463: score 62.2, E = 5e-18
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa IARELHDs++Q+L+ +++ql l+rr + d+ + +a + ++e
CP001875_2 396 ERATIARELHDSLAQALTYLRIQLTLLRRTV--DARDRAAHDIIAEF 440

relarealaevRrllgdLRpaal<-*
++ ea++++R+ll ++R +++
CP001875_2 441 DLALAEAYRQLRELLATFRLTIE 463


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-14 12 0|=
-13 86 0|=======
-12 120 47|===*=====
-11 199 388|=============== *
-10 656 901|=============================================== *
-9 822 1023|==========================================================*
-8 659 788|================================================ *
-7 575 495|===================================*======
-6 413 280|===================*==========
-5 298 150|==========*===========
-4 145 78|=====*=====
-3 94 40|==*====
-2 68 20|=*===
-1 34 10|*==
0 16 5|*=
1 19 2|*=
2 9 1|*
3 5 0|=
> 4 7 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 860.7017
P(chi-square) = 0

Total sequences searched: 4237

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: